PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G22250.1
Common NameLOC102711894
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 465aa    MW: 49482.9 Da    PI: 4.8433
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G22250.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.61.2e-27188242156
       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                   k++++WtpeLH+rFv+aveqL G++kA+P++ile+m++++Lt+++++SHLQkYR++
  OB06G22250.1 188 KAKVDWTPELHRRFVQAVEQL-GIDKAVPSRILEIMGIDSLTRHNIASHLQKYRSH 242
                   6799*****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.924185244IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-27186245IPR009057Homeodomain-like
SuperFamilySSF466897.26E-19186245IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-26188242IPR006447Myb domain, plants
PfamPF002496.5E-8191240IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0009658Biological Processchloroplast organization
GO:0009910Biological Processnegative regulation of flower development
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0010638Biological Processpositive regulation of organelle organization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MLAVSPAMCP DVDERAGLAG AEVVAAGMEV VGSVGMPSDM EFDFSVDDID FGDFFLRLED  60
GDVLPDLEVD PAEIFTDFEA AAASGGEGDG VQDQKVPTVE LLATQDVLDP CGDVAVEENA  120
AISEAGPGHE KAGCNQDDDA AEVNADVGGD AAAVAEAKAS SPSSTTSSSQ EAESRHKSSS  180
KSSQGKKKAK VDWTPELHRR FVQAVEQLGI DKAVPSRILE IMGIDSLTRH NIASHLQKYR  240
SHRKHMLVRE AEAASWTQRR QIYAAGGGTV AKRPESNVWA VPTIGFPPAP PPPPPPPPMQ  300
HFSRPLHVWG HPTIDSPRVP MWPPRPHLVP RGPAPPWVPP PPPQSDPAFW HHAYMRGPAH  360
MPTQGTPCMA MPMTAARFPA APVPGVVPCP MYRPLTPQPL ASKTQQDAQL QLQAQPSSES  420
IDAAIGDVLS KPWLPLPLGL KPPSLDSVMG ELQRQGVANV PPACG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-17185240257ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. {ECO:0000269|PubMed:19808806}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00022PBMTransfer from AT2G20570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G22250.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656059.10.0PREDICTED: probable transcription factor GLK1
SwissprotQ5Z5I40.0GLK1_ORYSJ; Probable transcription factor GLK1
TrEMBLJ3MDY10.0J3MDY1_ORYBR; Uncharacterized protein
STRINGOB06G22250.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24153886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.13e-52GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang Y, et al.
    A highly efficient rice green tissue protoplast system for transient gene expression and studying light/chloroplast-related processes.
    Plant Methods, 2011. 7(1): p. 30
    [PMID:21961694]