PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G22100.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 359aa    MW: 41490.2 Da    PI: 10.8893
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G22100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.15e-55211481128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 
                   lppGfrFhPtdeel+++yL +kv + +++  ++i+e+d++k+ePw+Lp+k+k +ekewyf+s rd+ky+tg r+nrat +gyWkatgkd+e+ s  +
  OB06G22100.1  21 LPPGFRFHPTDEELITYYLLRKVVDGSFNG-RAIAEIDLNKCEPWELPEKAKMGEKEWYFYSLRDRKYPTGLRTNRATGAGYWKATGKDREIRSGrT 116
                   79*************************999.89***************99999****************************************9767 PP

           NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                   g+lvg+kktLvfy+grapkg+kt+Wvmheyrl
  OB06G22100.1 117 GALVGMKKTLVFYRGRAPKGQKTQWVMHEYRL 148
                   888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-6219173IPR003441NAC domain
PROSITE profilePS5100559.72921173IPR003441NAC domain
PfamPF023654.4E-2822148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0010160Biological Processformation of organ boundary
GO:0010223Biological Processsecondary shoot formation
GO:0048366Biological Processleaf development
GO:0048504Biological Processregulation of timing of organ formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MDRCGELGLA GGGPRLDGGE LPPGFRFHPT DEELITYYLL RKVVDGSFNG RAIAEIDLNK  60
CEPWELPEKA KMGEKEWYFY SLRDRKYPTG LRTNRATGAG YWKATGKDRE IRSGRTGALV  120
GMKKTLVFYR GRAPKGQKTQ WVMHEYRLDG SYAYHFLSSS TRDEWVIARI FTKPGVFPVV  180
RKGRLGLSGG XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  240
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  300
XXXXXXXXXX XXXXXXXXXX XXXXXXXRRP ARRRRWPLAP ASSTAPLPGA SRHDRRRSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A8e-5371737168NAC domain-containing protein 19
3swm_B8e-5371737168NAC domain-containing protein 19
3swm_C8e-5371737168NAC domain-containing protein 19
3swm_D8e-5371737168NAC domain-containing protein 19
3swp_A8e-5371737168NAC domain-containing protein 19
3swp_B8e-5371737168NAC domain-containing protein 19
3swp_C8e-5371737168NAC domain-containing protein 19
3swp_D8e-5371737168NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1327334RRPARRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00562DAPTransfer from AT5G53950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G22100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046790.0AP004679.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0021N09.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693571.11e-132PREDICTED: protein CUP-SHAPED COTYLEDON 1-like
TrEMBLJ3MDW61e-131J3MDW6_ORYBR; Uncharacterized protein
STRINGOB06G22100.11e-132(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99403543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53950.15e-87NAC family protein