PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G20020.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Dof
Protein Properties Length: 269aa    MW: 29183.9 Da    PI: 7.3691
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G20020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1183.7e-372278258
        zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrkn 58
                  ++++++cprCds+ntkfCyynny+lsqPr+fCkaCrryWtkGG lrnvP+Ggg+ + 
  OB06G20020.1 22 PQEEVRCPRCDSANTKFCYYNNYNLSQPRHFCKACRRYWTKGGLLRNVPIGGGSPQT 78
                  67899************************************************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-202371IPR003851Zinc finger, Dof-type
PfamPF027012.5E-312475IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.4842680IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102864IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MQEFHPVPGL AGRLFGGAAA APQEEVRCPR CDSANTKFCY YNNYNLSQPR HFCKACRRYW  60
TKGGLLRNVP IGGGSPQTPP SSSSSSSVVA DVDTGHRGAK SARSAIAGDS STAACAVPAS  120
NASSAAAAAA XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  180
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXADWAP SPTALDAAGV  240
FDLAGAIAGD PSYWNPASWT DHDGTIYLP
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G20020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047914e-79AP004791.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0491D10.
GenBankAP0149624e-79AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693548.11e-64PREDICTED: dof zinc finger protein DOF3.1-like
TrEMBLJ3MDA87e-73J3MDA8_ORYBR; Uncharacterized protein
STRINGOB06G20020.11e-73(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.12e-28DOF zinc finger protein 1