PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G19370.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 337aa    MW: 36875.3 Da    PI: 7.0727
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G19370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.91.4e-1090130444
                   XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 
                    k +rr+++NReAAr+sR RKka+i++Le    +L    ++
  OB06G19370.1  90 QKMQRRLAQNREAARKSRMRKKAYIQQLESSRSKLMHLEQE 130
                   589**************************977777655544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.2E-883134No hitNo description
SMARTSM003383.1E-887150IPR004827Basic-leucine zipper domain
PfamPF077165.2E-889133IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.58889133IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.06E-791134No hitNo description
PROSITE patternPS00036094109IPR004827Basic-leucine zipper domain
PfamPF141448.6E-31175251IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MGMAAPGMAT ADQFCLPRMA AAAASQLENW GDSGVVVGSP FTDDTSTDLD DSADKQRHHA  60
LMGCGGGGGD AGEQRGADSS AVSKERTGDQ KMQRRLAQNR EAARKSRMRK KAYIQQLESS  120
RSKLMHLEQE LQRARQQGIF IATGGSGDHS HSMGGNGSLA FDLEYARWLD EHQRHINDVR  180
VALNAQMSDD ELRVLVDGVM AHYDQVFRLK SFATKSDVFH VLSGMWMSPA ERFFMWLGGF  240
RSSELLKVLA SHLEPLTDQQ LMGICNLQQS SQQAEDALSQ GMEALQQTLA DTLASGGPPR  300
GPPRWAAPTT SPTTWARWPS PWPSSPRSRT SSARLIS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G19370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1097190.0AK109719.1 Oryza sativa Japonica Group cDNA clone:002-146-A04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693541.10.0PREDICTED: transcription factor HBP-1b(c38)-like
SwissprotQ5Z6N91e-171TGAL3_ORYSJ; Transcription factor TGAL3
TrEMBLJ3MD430.0J3MD43_ORYBR; Uncharacterized protein
STRINGOB06G19370.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.12e-99bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]