PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G17570.1
Common NameLOC102722128
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 87aa    MW: 9716.96 Da    PI: 9.335
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G17570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.52.3e-0815541554
                  HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                  +iN+ +++L++llP++ + ++   s    L++++ YIksL
  OB06G17570.1 15 EINELISKLQSLLPSSRRRGGNQASTTKLLKETCSYIKSL 54
                  7**************75666666****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.074154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-91469IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-101477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-51554IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MSSRRSARSS VSEEEINELI SKLQSLLPSS RRRGGNQAST TKLLKETCSY IKSLHREVDD  60
LSDRLSDLMA GMDHNSPGAE IIRSLLR
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of brassinsteroid (BR) response. Controls lamina inclination by participating in two BR signaling pathways involving BRI1 and RGA1 (By similarity). {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of brassinsteroid (BR) response. Controls lamina inclination by participating in two BR signaling pathways involving BRI1 and RGA1. {ECO:0000269|PubMed:19648232}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G17570.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinolide. Repressed by abscisic acid (ABA). {ECO:0000269|PubMed:19648232}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0716011e-134AK071601.1 Oryza sativa Japonica Group cDNA clone:J023102C01, full insert sequence.
GenBankCT8322841e-134CT832284.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA029F08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655931.13e-55PREDICTED: transcription factor ILI4
SwissprotA2YAW82e-45ILI4_ORYSI; Transcription factor ILI4
SwissprotQ0DDF62e-45ILI4_ORYSJ; Transcription factor ILI4
TrEMBLJ3MCL37e-54J3MCL3_ORYBR; Uncharacterized protein
STRINGOB06G17570.11e-54(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92838145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.14e-27bHLH family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sui P, et al.
    H3K36 methylation is critical for brassinosteroid-regulated plant growth and development in rice.
    Plant J., 2012. 70(2): p. 340-7
    [PMID:22136623]