PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G34810.1
Common NameLOC102722775
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 313aa    MW: 33789.9 Da    PI: 6.2574
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G34810.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.21.3e-26152210259
                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    D ++WrKYGqK++kgs+fpr+YY+C+s   C+++k vers e p v++itY  eH h 
  OB05G34810.1 152 TDLWAWRKYGQKPIKGSPFPRGYYKCSSLkACMARKMVERSPEKPGVLVITYIAEHCHA 210
                   699************************9989*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081128.139146212IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.8E-26147212IPR003657WRKY domain
SuperFamilySSF1182901.57E-23149212IPR003657WRKY domain
SMARTSM007742.4E-31151211IPR003657WRKY domain
PfamPF031061.2E-21153209IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MEYSNDWDLQ ALVRSCGAAV AGSEPETAIA AAPPPELVGQ PVVRSASAAV ASYCDLEYLD  60
LYHHELPRAP FMVTAPPPST SRGRGRERGE GEREVLISFP AASTSGQGQL LPSRKLPGRK  120
PGVRTARPKR SKKSQLKKVV CEVPVADGGV STDLWAWRKY GQKPIKGSPF PRGYYKCSSL  180
KACMARKMVE RSPEKPGVLV ITYIAEHCHA VPTQINSLAG TTRNKPASPD HQQQPQPQQP  240
SSGQSPGATS TDEAATATGK REDSADTCSM GDDENDLWAP VEMDMDDFFG PFDDDIDHFL  300
EDDVGVLGRR LGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-18133213280Disease resistance protein RRS1
5w3x_D1e-18133213280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G34810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126131e-113CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692713.10.0PREDICTED: WRKY transcription factor 22-like
TrEMBLJ3MA570.0J3MA57_ORYBR; Uncharacterized protein
STRINGOB05G34810.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.17e-37WRKY family protein