PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G34770.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 310aa    MW: 33485.5 Da    PI: 7.0633
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G34770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.11.6e-32181238259
                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   +Dgy+WrKYGqK vk+s +prsYYrCt ++C vkk+vers+ d ++v++tYeg+H+h+
  OB05G34770.1 181 EDGYRWRKYGQKAVKNSSYPRSYYRCTAPRCGVKKRVERSQLDASMVITTYEGQHTHP 238
                   8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-34165240IPR003657WRKY domain
SuperFamilySSF1182903.4E-28172240IPR003657WRKY domain
PROSITE profilePS5081130.021175240IPR003657WRKY domain
SMARTSM007741.7E-38180239IPR003657WRKY domain
PfamPF031065.1E-26181238IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MSGSGGAAGH GLLYTDHPAA GFVPFDHDDG FLFDRSAACA GAGGVGVDGL IAPYSSITDY  60
LQAGFLQDVV VPVDASSTLG DAAVKHEMMV VVDRHAGQHH PGGGVAPVTP NSSSSEVAGD  120
QDELRRCKKG RRPEEEEEID EEGSTVQSCK MNKAKNIKKG EKKAREPRVA FMTKSEVDHL  180
EDGYRWRKYG QKAVKNSSYP RSYYRCTAPR CGVKKRVERS QLDASMVITT YEGQHTHPSP  240
VSYHVHRHHA AAGLMAAAAG FAAPPPPSLL RLCPDDDGLA TRVATMNQQQ MSYDVPSIEM  300
HATRDKVVQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-26170240777Probable WRKY transcription factor 4
2lex_A4e-26170240777Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G34770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1095681e-149AK109568.1 Oryza sativa Japonica Group cDNA clone:002-130-E04, full insert sequence.
GenBankAY8706001e-149AY870600.1 Oryza sativa (japonica cultivar-group) WRKY8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655633.10.0PREDICTED: probable WRKY transcription factor 4
TrEMBLJ3MA530.0J3MA53_ORYBR; Uncharacterized protein
STRINGOB05G34770.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.12e-40WRKY DNA-binding protein 28