PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G34480.1
Common NameLOC102712538
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 258aa    MW: 26637.6 Da    PI: 7.7408
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G34480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA633.5e-20140174135
          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                   C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++
  OB05G34480.1 140 CANCSTTSTPLWRNGPRGPKSLCNACGIRYKKEER 174
                   ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.5E-19134185IPR000679Zinc finger, GATA-type
PROSITE profilePS5011414.061134170IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.14E-14136175No hitNo description
Gene3DG3DSA:3.30.50.102.3E-17138174IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.94E-15139171No hitNo description
PfamPF003206.6E-18140174IPR000679Zinc finger, GATA-type
PROSITE patternPS003440140165IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009909Biological Processregulation of flower development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MLHHYTSAGN HQDVAAGSPS AMASSTFSLF FPLPKGQWPP AAEEAYDDHS TVTTSPSSPS  60
SSSTGSVDCT LSLGTPSSRR AEPVAAPAIF GAPPAAHCPS LPATVPWDTS AESYYCQQGK  120
PAAGVAKCAV GHDTLIDRRC ANCSTTSTPL WRNGPRGPKS LCNACGIRYK KEERRAAATA  180
DGNGAGSHGF TAHRARGSPA RAAPAVTCSE ETSPYLGAGG DVADAPFLAW RLNVVPPAAA  240
AATALSVWPE RASIFHYN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates organogenesis during transition from the vegetative to the reproductive phase. Regulates the expression of CYP78A11/PLA1, HD3A and MADS1 during reproductive development in rice. May act upstream of CYP78A11/PLA1 during panicle development. Acts independently of the photoperiodic and gibberellin signaling pathways. {ECO:0000269|PubMed:19337211}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00110ampDAPTransfer from AT2G18380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G34480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0734647e-93AK073464.1 Oryza sativa Japonica Group cDNA clone:J033044C20, full insert sequence.
GenBankAK1012877e-93AK101287.1 Oryza sativa Japonica Group cDNA clone:J033033F09, full insert sequence.
GenBankDQ7845467e-93DQ784546.1 Oryza sativa Japonica Group putative NECK LEAF 1 (NL1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006654834.10.0PREDICTED: GATA transcription factor 19
SwissprotQ6L5E51e-87GAT15_ORYSJ; GATA transcription factor 15
TrEMBLJ3MA240.0J3MA24_ORYBR; Uncharacterized protein
STRINGOB05G34480.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.13e-25GATA family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]