PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G34020.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 245aa    MW: 27057.4 Da    PI: 4.9896
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G34020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY811.3e-2570130158
                   ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                   ldDg +WrKYGqK++ g+++pr+Y+rCt++   gC+++k+v+r++ dp +++++Y geH +
  OB05G34020.1  70 LDDGLSWRKYGQKDILGAKYPRAYFRCTHRhtqGCNATKQVQRTDGDPLLFDVVYLGEHIC 130
                   58***************************98999*************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-2657132IPR003657WRKY domain
SuperFamilySSF1182901.31E-2463132IPR003657WRKY domain
PROSITE profilePS5081121.21865128IPR003657WRKY domain
SMARTSM007747.4E-3970132IPR003657WRKY domain
PfamPF031061.7E-2471130IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MVELRGERQT LTSELAQVRA MARELEAKMD PDKAAARELC RALSSSVDRK GMAKVRRQVR  60
VTSVQDMVSL DDGLSWRKYG QKDILGAKYP RAYFRCTHRH TQGCNATKQV QRTDGDPLLF  120
DVVYLGEHIC GQAAAAAQRA PPLAGAEPVP MQPQHAGQEQ SSPPAVETEG ITHQVVEDPM  180
APFLFTSTQD VVDGYFSFIS PANSDCQFSS DFSAGSAGVD MDHEARFDDL FLITSEFFQP  240
EIQNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-2269130768OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G34020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1083891e-115AK108389.1 Oryza sativa Japonica Group cDNA clone:002-142-F03, full insert sequence.
GenBankHQ8588601e-115HQ858860.1 Oryza sativa Japonica Group isolate UT1669 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692948.11e-145PREDICTED: probable WRKY transcription factor 53
TrEMBLJ3M9X80.0J3M9X8_ORYBR; Uncharacterized protein
STRINGOB05G34020.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.23e-30WRKY family protein