PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G31230.1
Common NameLOC102718457
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 439aa    MW: 49187.7 Da    PI: 5.0083
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G31230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.91.9e-34201112102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+ye++ed+++++++sw   g sfvv+++ +f++++LpkyFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +g+++ll++i+
  OB05G31230.1  20 FLIKTYEMVEDATTNHVVSWGPGGASFVVWNPLDFSRDLLPKYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEDFIRGQTHLLKNIH 107
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
  OB05G31230.1 108 RRKP 111
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.62E-3515109IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.9E-3816109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-6116109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-192043IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.4E-3020109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-195870IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405983IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-197183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MESSHSGGGG REKSSGPPPF LIKTYEMVED ATTNHVVSWG PGGASFVVWN PLDFSRDLLP  60
KYFKHNNFSS FIRQLNTYGF RKIDPERWEF ANEDFIRGQT HLLKNIHRRK PVHSHSLQNQ  120
INGPLAESER RELEEEINRL KYEKSLLVAD LQRQSQQQYV INWQMQTLEG RLMAMEQRQK  180
NMVASLCEML QRRAGGGVVS SSSLLEADDH FSKKRRVPKI DLFADDGAAV EQKVFELQGI  240
GGSETPGVSP VFPVNGENLD RVELSLVSLE KLFQRANDAC TAAEEMYHGG TEPSTAVTPA  300
EMNTAPMETG INLQLLPASL HSTEFAESPT FVHSPELPMA EIHEHARVTA EADVNSEIAS  360
STDTSQDGTT ETEASLGPTN DVFWERFLTE TPQSCFAGSE RQDDAKERLD CNGFRHREKV  420
DQITEQMGHL ASAEHTLRT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-24810917129Heat shock factor protein 1
5d5v_B7e-24810917129Heat shock factor protein 1
5d5v_D7e-24810917129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G31230.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:12032317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0500960.0AB050096.1 Oryza sativa Japonica Group Spl7 mRNA for heat stress transcription factor Spl7, complete cds.
GenBankAK1004120.0AK100412.1 Oryza sativa Japonica Group cDNA clone:J023087K12, full insert sequence.
GenBankAY3444920.0AY344492.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006654692.10.0PREDICTED: heat stress transcription factor A-4d-like
SwissprotQ93VB50.0HFA4D_ORYSJ; Heat stress transcription factor A-4d
TrEMBLJ3M9490.0J3M949_ORYBR; Uncharacterized protein
STRINGOB05G31230.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.15e-70heat shock transcription factor A4A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Kojo K, et al.
    Regulatory mechanisms of ROI generation are affected by rice spl mutations.
    Plant Cell Physiol., 2006. 47(8): p. 1035-44
    [PMID:16816407]