PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB05G28920.1

Common Name

LOC102713546

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 222aa MW: 24365.5 Da PI: 6.1695

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB05G28920.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.1	2.5e-10	67	114	3	50
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 +l + rr NReA r++R++Kka + Lee+vk+L a N++L +l+ OB05G28920.1 67 DLAKPRRPLGNREAVRKYREKKKAHAAFLEEEVKKLRATNQQLLRRLQ 114 6777899999*********************************98887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.3E-15	63	133	No hit	No description
SMART	SM00338	5.4E-11	65	132	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	2.0E-13	67	122	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.887	67	114	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.06E-8	70	115	No hit	No description
CDD	cd14686	6.83E-12	72	123	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MDDVPSQLLF SHPEVPDSFD DFLNNITTCT HTHTCNPAGP SAATHTHTCL HTHTQLYASG 60 EEDMKEDLAK PRRPLGNREA VRKYREKKKA HAAFLEEEVK KLRATNQQLL RRLQGHAALE 120 AEVIRLRSIL LDVRGKIDME IGTFPFQKQC SVGSVACTDP SMCLNGNSEA GGIWEECSRP 180 VGADRMIDKD GSMSQEIDIP GPVHSISMGV VGSLVTSASL SE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB05G28920.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC112160	0.0	AC112160.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1579_G03, complete sequence.
GenBank	AK072281	0.0	AK072281.1 Oryza sativa Japonica Group cDNA clone:J023018E07, full insert sequence.
GenBank	AK104986	0.0	AK104986.1 Oryza sativa Japonica Group cDNA clone:002-110-E11, full insert sequence.
GenBank	AP014961	0.0	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006654590.1	1e-167	PREDICTED: uncharacterized protein LOC102713546
Swissprot	Q8GTS2	6e-51	BZP23_ARATH; Basic leucine zipper 23
TrEMBL	J3M8G8	1e-165	J3M8G8_ORYBR; Uncharacterized protein
STRING	OB05G28920.1	1e-166	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3831	36	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16770.1	8e-37	bZIP family protein

Link Out ? help Back to Top
Entrez Gene	102713546

Publications ? help Back to Top
Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]