PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G27830.1
Common NameLOC102700343
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 313aa    MW: 32834.2 Da    PI: 4.4843
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G27830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY82.54.3e-26115175259
                   --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                   +Dg+ WrKYGqK++k+s++pr Y+rC+++   gC+++++v++s++dp++ +itY geH+++
  OB05G27830.1 115 EDGFLWRKYGQKDIKNSKHPRLYFRCSYKeddGCKATRQVQQSEDDPSLYVITYFGEHTCS 175
                   7***************************99999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-26108175IPR003657WRKY domain
PROSITE profilePS5081120.335109172IPR003657WRKY domain
SuperFamilySSF1182907.59E-25110175IPR003657WRKY domain
SMARTSM007741.3E-39114176IPR003657WRKY domain
PfamPF031063.1E-26115174IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MALIATGATP AASVASELIA QGRESAAALE ALLQGASLPP AHGGLQSLAA EILRCCDRAL  60
AVMRGDEAES STGGGAAAAC GVKRKTAAAQ ATRKRRVGGG GAAPATRVET ARTSEDGFLW  120
RKYGQKDIKN SKHPRLYFRC SYKEDDGCKA TRQVQQSEDD PSLYVITYFG EHTCSGKTAA  180
AAVDDVDDDD AASSRHFVIN FGSATASSGA PPLLYSSDSN GGVLSETTLS SSPPQSMRSP  240
EQDREDSGVM MTKEEPVDSR PASAGSSPAD DASCASLAME PLIDNLNWDK FGDSSFVDID  300
EFMNFGEIDL FQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-23115174968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G27830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655415.10.0PREDICTED: probable WRKY transcription factor 62
TrEMBLJ3M8590.0J3M859_ORYBR; Uncharacterized protein
STRINGOB05G27830.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46632667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40750.11e-22WRKY DNA-binding protein 54