PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G26340.1
Common NameLOC102706753
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 315aa    MW: 34370.4 Da    PI: 6.9299
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G26340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.6e-073881344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT eE + + +a +    +   +W+++a+ ++ g+t  ++  ++
     OB05G26340.1 38 PWTLEENKVFEQALAAVDRNdpeRWERVAELLP-GKTVADIMTHY 81
                     8************9999988999**********.********999 PP
2Myb_DNA-binding45.71.6e-14150194347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G g+W+ I+r + + Rt+ q+ s+ qky
     OB05G26340.1 150 PWTEEEHKLFLMGLKKYGRGDWRNISRNFVTSRTPTQVASHAQKY 194
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.5E-63587IPR001005SANT/Myb domain
PROSITE profilePS500906.0053785IPR017877Myb-like domain
SuperFamilySSF466891.08E-93792IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-43782IPR009057Homeodomain-like
CDDcd001673.16E-63881No hitNo description
PROSITE profilePS5129417.568143199IPR017930Myb domain
SuperFamilySSF466891.5E-17145199IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-17146197IPR006447Myb domain, plants
SMARTSM007175.8E-13147197IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-12147193IPR009057Homeodomain-like
PfamPF002497.4E-12150194IPR001005SANT/Myb domain
CDDcd001672.12E-11150195No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MMKESYMEVL PPAPAHYFAG QAAGGWFLQD RRSGGGSPWT LEENKVFEQA LAAVDRNDPE  60
RWERVAELLP GKTVADIMTH YDDLENDVCF IEAGLVPFPH YGAGGSPSSG FTLDWDGGDD  120
AAGLGFKRSC YMVGGKRARG PDQERKKGVP WTEEEHKLFL MGLKKYGRGD WRNISRNFVT  180
SRTPTQVASH AQKYFIRLNS GGKDKRRSSI HDITTVNIPD DDHGNPSPSP PSVLTAHSSS  240
AAAAPVISEQ FGVLVDSKPP PPHQLGRGAG HHFVPHPYGQ VKLEASNSHV AGHHGGRLDD  300
SVLMQMQCGQ LQPLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-1734105677RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G26340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0681380.0AK068138.1 Oryza sativa Japonica Group cDNA clone:J013135D01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006654489.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H74e-83DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLJ3M7R00.0J3M7R0_ORYBR; Uncharacterized protein
STRINGOB05G26340.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.16e-78Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]