PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB05G26010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 249aa MW: 27863 Da PI: 5.8055 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 143 | 1.6e-44 | 4 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk........kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppG+rF Pt+eelv++yL++k++g++ ++e+vi+ +d+++++Pw+Lp + +++e+ w++F++r++++a+g r++r+t sgyWka g+ OB05G26010.1 4 LPPGYRFYPTEEELVCFYLRHKLDGRRcRDIERVIPVADVCSLDPWQLPGtprqvhqgAWTGDEEPWFYFCPRQEREARGGRPSRTTPSGYWKAAGT 100 79*************************5566778**************954776655444447789******************************* PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s++++ +g+kkt+vfy+grap+g+kt+W m+eyr+ OB05G26010.1 101 PGVVYSADRRPIGMKKTMVFYRGRAPSGTKTEWKMNEYRA 140 **************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.89E-49 | 3 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.666 | 4 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-24 | 5 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MGELPPGYRF YPTEEELVCF YLRHKLDGRR CRDIERVIPV ADVCSLDPWQ LPGTPRQVHQ 60 GAWTGDEEPW FYFCPRQERE ARGGRPSRTT PSGYWKAAGT PGVVYSADRR PIGMKKTMVF 120 YRGRAPSGTK TEWKMNEYRA FHYPAAAAPP SLPPQLRSEF SLCRLYTRSG CLRQFDRRAP 180 ADENTGTTST AAAAASPEEN DGSGGSMQQQ QQQEQAELVI DQGGAAVDPD GWYDSDAATL 240 TALLYWPGD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-31 | 4 | 168 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-31 | 4 | 168 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-31 | 4 | 168 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-31 | 4 | 168 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-31 | 4 | 168 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-31 | 4 | 168 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-31 | 4 | 168 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-31 | 4 | 168 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-31 | 4 | 168 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-31 | 4 | 168 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-31 | 4 | 168 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-31 | 4 | 168 | 20 | 168 | NAC domain-containing protein 19 |
4dul_A | 2e-31 | 4 | 168 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-31 | 4 | 168 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 22 | 31 | RHKLDGRRCR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB05G26010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK063703 | 1e-135 | AK063703.1 Oryza sativa Japonica Group cDNA clone:001-119-G11, full insert sequence. | |||
GenBank | JN185442 | 1e-135 | JN185442.1 Oryza sativa Japonica Group NAC transcription factor 12 (NAC12) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015692825.1 | 1e-155 | PREDICTED: NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 9e-65 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | J3M7M7 | 0.0 | J3M7M7_ORYBR; Uncharacterized protein | ||||
STRING | OB05G26010.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 3e-64 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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