PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G25870.1
Common NameLOC102700144
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Dof
Protein Properties Length: 306aa    MW: 32317.2 Da    PI: 5.9553
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G25870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.27.7e-383589660
        zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                   +cprCds ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++
  OB05G25870.1 35 PNCPRCDSPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRR 89
                  68***************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-292789IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.8543589IPR003851Zinc finger, Dof-type
PfamPF027017.4E-323589IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103773IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MLSSHCESML AYAAASRRAV VVDHRRYRPN VEVAPNCPRC DSPNTKFCYY NNYSLSQPRY  60
FCKGCRRYWT KGGSLRNVPV GGGCRKNRRG KAVAVRALVV DDAAVEASRG AGAFSHRFHG  120
PVRPDLLLEG MVGNPPAGGI GQPVPDEKPA AADGSTIDLA LLYAKFLNQQ PLAEQGAAAV  180
PESVDTSSGS SDPHTSPDAR PAATYGTGRG VLGELSAETG AAMVQCAQAL GELNFSVDQS  240
CYTSLGLPTD GGDLVLPSTL DRGAKYEPFD SLPEDALSLH DIISGDDDVW SNALGCQGLE  300
AALCRP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00405DAPTransfer from AT3G52440Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G25870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1474620.0AC147462.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1110B01, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006654467.10.0PREDICTED: uncharacterized protein LOC102700144
SwissprotQ9SVC52e-35DOF35_ARATH; Dof zinc finger protein DOF3.5
TrEMBLJ3M7L30.0J3M7L3_ORYBR; Uncharacterized protein
STRINGOB05G25870.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26593683
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.13e-37Dof family protein