PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G22130.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 330aa    MW: 35021 Da    PI: 4.0507
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G22130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.11e-131151551356
           AP2  13 grWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                   g+++AeIrd +     r  r++lg+f+taeeAak ++ a+ +l+g+
  OB05G22130.1 115 GKYAAEIRDpW-----RlVRVWLGTFDTAEEAAKVYDLAAIQLHGA 155
                   89*******99.....88*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.84596162IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-19114163IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-14114163IPR016177DNA-binding domain
SMARTSM003801.2E-15115168IPR001471AP2/ERF domain
PfamPF008473.1E-5115154IPR001471AP2/ERF domain
CDDcd000182.26E-20115164No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MSSLLVLVCL SRRPLVWWLE EATATATATA AEEKGWRLEG DGLTEVGMGT CAPPQTKTKL  60
SEGFGRGMPR DSGVRFSVGT VFGDAKRPEG TASVGMTEGP LSKTSAELLP AAAVGKYAAE  120
IRDPWRLVRV WLGTFDTAEE AAKVYDLAAI QLHGADATAN FNQSGDAADL EVPPEVAVRV  180
PQPPGVSKNA SRATSTTSVV RSFPPSAEAT TVETTNKKKS SLPPVVRETD ESSEVFGCSF  240
SDDGGFAGEL PPLYTDFDLL VDFPEPPLDF LSNLPVEPFS LAPISGNNGS LDFHLDDDDD  300
DAPSPAAAAQ VDDFFQDITD LFQIDPLPVV
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G22130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692575.11e-177PREDICTED: ethylene-responsive transcription factor CRF2-like
TrEMBLJ3M6I90.0J3M6I9_ORYBR; Uncharacterized protein
STRINGOB05G22130.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.12e-16cytokinin response factor 1