PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB05G14280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 125aa MW: 13791.4 Da PI: 7.85 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121.7 | 4.1e-38 | 15 | 103 | 1 | 89 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrr+Ca++C+++pyf +p+kfa vhk+FGasnv+k+l +++e++r da++slvyeA+ r+rdPvyG++g il+lqqq+ OB05G14280.1 15 PCAACKLLRRRCAQECPFSPYFSPLEPHKFASVHKVFGASNVSKMLLEVQESQRGDAANSLVYEANLRLRDPVYGCMGAILTLQQQVXX 103 7*************************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.131 | 14 | 125 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-38 | 15 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
GAEELQPAGG XTITPCAACK LLRRRCAQEC PFSPYFSPLE PHKFASVHKV FGASNVSKML 60 LEVQESQRGD AANSLVYEAN LRLRDPVYGC MGAILTLQQQ VXXXXXXXXX XXXXXXXXXX 120 XXPPA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-35 | 15 | 101 | 11 | 97 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-35 | 15 | 101 | 11 | 97 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB05G14280.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP095831 | 1e-107 | FP095831.1 Phyllostachys edulis cDNA clone: bphyst036h20, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881485.1 | 2e-61 | LOB domain-containing protein 15 isoform X1 | ||||
Refseq | XP_025881486.1 | 2e-61 | LOB domain-containing protein 15 isoform X2 | ||||
Swissprot | Q9AT61 | 2e-54 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | J3M4A4 | 1e-66 | J3M4A4_ORYBR; Uncharacterized protein | ||||
STRING | OB05G14280.1 | 2e-67 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2630 | 38 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30340.1 | 7e-57 | LOB domain-containing protein 13 |
Publications ? help Back to Top | |||
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