PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G13650.1
Common NameLOC102718272
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 141aa    MW: 15433.3 Da    PI: 9.1026
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G13650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.54.4e-192357135
          GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                  C+ C++t+Tp+WR gp g+++LCnaCG++yrkk++
  OB05G13650.1 23 CVECRATTTPMWRGGPTGPRSLCNACGIRYRKKRR 57
                  ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.4661753IPR000679Zinc finger, GATA-type
SMARTSM004011.8E-141767IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.71E-131858No hitNo description
Gene3DG3DSA:3.30.50.101.0E-142158IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.03E-122358No hitNo description
PROSITE patternPS0034402348IPR000679Zinc finger, GATA-type
PfamPF003207.6E-172357IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0048527Biological Processlateral root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MGSSEQKVIG IAAAAEEEGR RCCVECRATT TPMWRGGPTG PRSLCNACGI RYRKKRRQEL  60
GLDNKQQQQP QPQPQQQQEH HHHQEDHSDA ASSVKDSSSS SSNKSSSLQV VKKRRVLMGV  120
EEAAILLMAL SSSSTPTLLH G
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G13650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126131e-83CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655008.11e-100PREDICTED: GATA transcription factor 23-like
RefseqXP_015692844.11e-100PREDICTED: GATA transcription factor 23-like
TrEMBLJ3M4418e-99J3M441_ORYBR; Uncharacterized protein
STRINGOB05G13650.11e-99(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67212854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.12e-15GATA transcription factor 23