PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB05G12110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 234aa MW: 26076.6 Da PI: 7.7904 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 32.5 | 1.7e-10 | 39 | 59 | 2 | 22 |
--SS-EEEEEEE--TT-SS-E CS WRKY 2 dDgynWrKYGqKevkgsefpr 22 D ++WrKYGqK++kgs++pr OB05G12110.1 39 ADSWSWRKYGQKPIKGSPHPR 59 69******************9 PP | |||||||
2 | WRKY | 45.5 | 1.5e-14 | 111 | 151 | 20 | 59 |
S-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 20 fprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +r+YY+C+s gCp++k+v+++++d ++++itY+++Hnh+ OB05G12110.1 111 ASRGYYKCSSYrGCPARKQVDKCRNDASLLIITYTSDHNHD 151 68******9877****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.7E-30 | 31 | 58 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.89E-8 | 36 | 60 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.1E-25 | 38 | 152 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.3E-6 | 40 | 60 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.864 | 40 | 153 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-11 | 110 | 152 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.4E-11 | 111 | 151 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.7E-30 | 113 | 152 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MTKMSSMRAD GSVPKRRRQD VQKVVVSLKD HKVVQGPPAD SWSWRKYGQK PIKGSPHPRY 60 HQLALVPHTD TAMDVLVILQ SFAFALVLAC VMYITDNFYL LTYSLCGSYS ASRGYYKCSS 120 YRGCPARKQV DKCRNDASLL IITYTSDHNH DKYTATSSVQ EQKHNPDSTD AGAVLSNGMA 180 LAEVTVASSK LNNEEESCDF FDELEELPVS ASPLPSLSFM VQDSCFSDAR TRLL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB05G12110.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC130598 | 1e-105 | AC130598.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0056I11, complete sequence. | |||
GenBank | AK241799 | 1e-105 | AK241799.1 Oryza sativa Japonica Group cDNA, clone: J065208G18, full insert sequence. | |||
GenBank | AK288062 | 1e-105 | AK288062.1 Oryza sativa Japonica Group cDNA, clone: J075154N16, full insert sequence. | |||
GenBank | AP014961 | 1e-105 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639937.1 | 4e-99 | probable WRKY transcription factor 69 | ||||
TrEMBL | J3M3N7 | 1e-175 | J3M3N7_ORYBR; Uncharacterized protein | ||||
STRING | OB05G12110.1 | 1e-176 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14912 | 18 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29280.1 | 1e-18 | WRKY DNA-binding protein 65 |