PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G11530.1
Common NameLOC102720330
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 279aa    MW: 30705 Da    PI: 9.9358
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G11530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.31.9e-132878155
           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  OB05G11530.1 28 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 78
                  89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.56E-262888No hitNo description
PfamPF008475.6E-92878IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-172887IPR016177DNA-binding domain
PROSITE profilePS5103215.5272986IPR001471AP2/ERF domain
SMARTSM003801.8E-322992IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-162986IPR001471AP2/ERF domain
PRINTSPR003672.1E-63041IPR001471AP2/ERF domain
PRINTSPR003672.1E-66888IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MKQMKSLSKE EFVHVLRRQS TGFSRGSSKY RGVTLHKCGR WEARMGQFLG KKYIYLGLFD  60
SEVEAARAYD KAAIKCNGRE AVTNFEPSTY DGEMPTDAAV QEADVNLNLS ISQPASQQSP  120
KRDSSSLGLQ IHHGSFEGSE FKRAKNDAPS ELASRPHQFP LLTEHPPIWT AQPHPLFPNN  180
EDASRSSDEK RKQEGPGVPS WAWKQVSQHH HHHPAAAPPP KLPLPFFSSS SSSPSSAAAS  240
SGFSKATTTG AAHTASLRFD PTAPSSSSSS RHHHHHHRQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G11530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6851170.0AY685117.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D23-like (AP2D23) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693212.10.0PREDICTED: floral homeotic protein APETALA 2
SwissprotB8AXC31e-143AP21_ORYSI; APETALA2-like protein 1
TrEMBLJ3M3H90.0J3M3H9_ORYBR; Uncharacterized protein
STRINGOB05G11530.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100832935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.32e-60related to AP2.7