PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G11070.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 301aa    MW: 33150.7 Da    PI: 6.5156
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G11070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.73.1e-143683148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed +lv  v+++G ++W+  a+  g++Rt+k+c++rw +yl
     OB05G11070.1 36 KGPWTEQEDVQLVWFVRLFGERRWDFLAKVSGLKRTGKSCRLRWVNYL 83
                     79********************************************97 PP
2Myb_DNA-binding52.41.2e-1689134148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rgr T++E+ l++++++q+G++ W++Iar ++ gRt++++k++w++++
     OB05G11070.1  89 RGRITADEERLILQLHAQWGSR-WSRIARSLP-GRTDNEIKNFWRTHM 134
                      899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.9973183IPR017930Myb domain
SuperFamilySSF466892.53E-2733130IPR009057Homeodomain-like
SMARTSM007171.8E-123585IPR001005SANT/Myb domain
PfamPF002497.8E-133683IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-193790IPR009057Homeodomain-like
CDDcd001672.33E-83883No hitNo description
PROSITE profilePS5129422.85584138IPR017930Myb domain
SMARTSM007171.6E-1588136IPR001005SANT/Myb domain
PfamPF002492.9E-1489133IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-2391136IPR009057Homeodomain-like
CDDcd001677.95E-1093134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MAEVEVEEEV MMVSGGGGGG NKKKNMSGDD VSRMRKGPWT EQEDVQLVWF VRLFGERRWD  60
FLAKVSGLKR TGKSCRLRWV NYLHPGLKRG RITADEERLI LQLHAQWGSR WSRIARSLPG  120
RTDNEIKNFW RTHMRKMAQE AKKKKTPASS AAPTSSSGSL LSSSSLTSSC SASASASSNN  180
GTVTTATTTT TTTTSSALTR ALQESNSGGD DDAGDQLVAA TTPASHHHHQ QQEEQMDYTM  240
DQLWNEIAAA EAESWAAGCG GHDAAAAAMA SPVWDQYCTD DYSLWRIDDE EYYKKMLDAS  300
Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-26361364103MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G11070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519041e-101JF951904.1 Triticum aestivum clone TaMYB20 R2R3-MYB protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693361.11e-172PREDICTED: transcription factor MYB48
TrEMBLJ3M3D30.0J3M3D3_ORYBR; Uncharacterized protein
STRINGOB05G11070.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.36e-63myb domain protein 59