PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB05G10240.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 345aa    MW: 37008.1 Da    PI: 6.4135
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB05G10240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.55.8e-09183230455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + + Y++sLq
  OB05G10240.1 183 SHSLAERVRREKISERMKMLQSLVPGC----DKVTGKALMLDEIISYVQSLQ 230
                   8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-17177248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.93E-11177234No hitNo description
Gene3DG3DSA:4.10.280.106.4E-17179243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.675179229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-6183230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-10185235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MESFCEAVHQ LHDQSSSSSS SLLPCCFLSA PQPLPFPGFP AGNNLEEPAP AAAAMAAYES  60
SSCSTLDPTS TPIMMYSPMV LQPQESPLSF ENAVPGDKKW MPGIQGSCTC SLGSTQEMDG  120
SWGKSRKHRR SNVGVKGLEE KKARRVVVQQ HGDDAKAKEA GGEPPAPAGY IHVRARRGQA  180
TDSHSLAERV RREKISERMK MLQSLVPGCD KVTGKALMLD EIISYVQSLQ NQVEFLSMKL  240
ASLSPMMYYE FGPGIGMYPD VLPQLAKMPH EQLVQCMGQG DQMGSTGGVP GGISLSLPAQ  300
GGPTGFAQDG SSNSNHMNAL VMQVGEQGQQ GPLHQVQMSS LCFFQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB05G10240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0658640.0AK065864.1 Oryza sativa Japonica Group cDNA clone:J013044E05, full insert sequence.
GenBankHQ8588530.0HQ858853.1 Oryza sativa Japonica Group isolate UT1616 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015692858.10.0PREDICTED: transcription factor bHLH77-like
TrEMBLJ3M3500.0J3M350_ORYBR; Uncharacterized protein
STRINGOB05G10240.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP167931212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.21e-46bHLH family protein