PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB04G37720.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 131aa MW: 14347.4 Da PI: 6.5041 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 34.3 | 7e-11 | 1 | 27 | 102 | 128 |
NAM 102 lkktLvfykgrapkgektdWvmheyrl 128 ++ktLvfy grap+g+ktdW++heyrl OB04G37720.1 1 MRKTLVFYLGRAPNGTKTDWIIHEYRL 27 89***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 20.353 | 1 | 45 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 7.85E-14 | 1 | 45 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MRKTLVFYLG RAPNGTKTDW IIHEYRLVSV ADHQEGWVVC RAFQKPTTFT LQSPPLLHLQ 60 QHMHGDSGLV LASPPAPAPA DGDKESNMLL TPGAAGDPVA DHHSQLLAMM KQQAGAIDWS 120 FLDALLLHDS T |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB04G37720.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL606656 | 4e-31 | AL606656.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0020J19, complete sequence. | |||
GenBank | AP014960 | 4e-31 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015691628.1 | 9e-92 | PREDICTED: NAC domain-containing protein 30-like | ||||
TrEMBL | J3M2Z7 | 8e-92 | J3M2Z7_ORYBR; Uncharacterized protein | ||||
STRING | OB04G37720.1 | 1e-92 | (Oryza brachyantha) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62380.1 | 2e-19 | NAC-domain protein 101 |