PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G37650.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 528aa    MW: 56748.3 Da    PI: 5.6626
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G37650.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B379.73.1e-25119218399
                   EE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
            B3   3 kvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                   k+lt+sd+++ g +++p+ +ae++       + ++ +   l ++d++g+sWe+++i+r++++r++lt+GW++Fv+a+ L +gD+vvF+  +r + +l
  OB04G37650.1 119 KQLTQSDANNGGGFSVPRLCAESIfppldfdDDPPVQ--ILNMTDLQGKSWEFRHIFRGTPRRHLLTTGWSKFVNAKVLVAGDTVVFM--RRPDLKL 211
                   89***************************96545444..8************************************************..67***** PP

                   EEEEE-S CS
            B3  93 vvkvfrk 99 
                   +v+v+r+
  OB04G37650.1 212 LVGVRRA 218
                   *****97 PP
2Auxin_resp52.12.8e-18241311169
    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkma.fetedsserrl.sGtvvgvsdl 69 
                   a++ as+ ++F+v+Y+Pr+++ eFvv++ +vek l++ +++Gm+++++ +e+ed +++ +  Gt+  v   
  OB04G37650.1 241 AVRLASNDEPFTVTYYPRQGAGEFVVPRMEVEKGLTSAFMPGMQVRIQiMESEDTRRTAWlNGTINKVYYQ 311
                   67889******************************************858***************998764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.67E-27114231IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.7E-16117219IPR003340B3 DNA binding domain
PROSITE profilePS5086312.478117219IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.2E-34118227IPR015300DNA-binding pseudobarrel domain
PfamPF023622.0E-21119218IPR003340B3 DNA binding domain
CDDcd100171.15E-17119217No hitNo description
PfamPF065071.8E-13241310IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MALPPAASPP PPPTPVDPIV WLACASPLSR LPVVGSQVYY FPAGHAQQCP TPLPLPAHPL  60
FLCSLTALSL SADPTTGEPY ATISLLPLRP GTPPAAPASL PAPGVGSQRQ PPVFCYYPKQ  120
LTQSDANNGG GFSVPRLCAE SIFPPLDFDD DPPVQILNMT DLQGKSWEFR HIFRGTPRRH  180
LLTTGWSKFV NAKVLVAGDT VVFMRRPDLK LLVGVRRAPR FDADSRCNAR ARVPAQEIME  240
AVRLASNDEP FTVTYYPRQG AGEFVVPRME VEKGLTSAFM PGMQVRIQIM ESEDTRRTAW  300
LNGTINKVYY QQMWNGLEVD WDSSAASFFR TDRCVNPWQV QPVGFPPLPS GVNINPNTIS  360
SAPICTEDSL LVPSPMLPPQ PPVSIQGARH NNPNAHADIP SSSTSVLTTQ ALFPTGLQNS  420
VPPSLGGGSS SMVNPQNGSP SNNPVNTPPS DLPDGMKTIQ LCIPEKTIQL FGVKITSPVQ  480
SDTNGGFSSA QVNQVPEGMD DETSAQEATD TTPTGSPTNG HNQDAARL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-582034323355Auxin response factor 1
4ldy_B1e-582034323355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G37650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006653916.10.0PREDICTED: LOW QUALITY PROTEIN: auxin response factor 13-like
SwissprotQ7XSS90.0ARFM_ORYSJ; Auxin response factor 13
TrEMBLJ3M2Z00.0J3M2Z0_ORYBR; Auxin response factor
STRINGOB04G37650.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113553137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.16e-70auxin response factor 17
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]