PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G36540.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 447aa    MW: 49075.1 Da    PI: 8.3806
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G36540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.23e-18313408395
                   EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
            B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                   k+lt+sdv++ gr+v+pk+ ae+h   ++++e++++++ d +   +W++k+++  ++ks++yvl+  + +Fvk +gL +gD+++++ ++  ++e+vv
  OB04G36540.1 313 KELTNSDVGNIGRIVMPKRDAEAHlpALNQREGVMVKMDDfKIETTWNFKYRFwpNNKSRMYVLE-STGGFVKHHGLTTGDILIIYKSS-VSGEFVV 407
                   89************************99999*********8888*******9989999999**99.9******************9433.6666666 PP

                   E CS
            B3  95 k 95 
                   +
  OB04G36540.1 408 R 408
                   5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100173.69E-22310408No hitNo description
Gene3DG3DSA:2.40.330.101.1E-23310408IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.05E-18310403IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.966311413IPR003340B3 DNA binding domain
SMARTSM010199.5E-8311411IPR003340B3 DNA binding domain
PfamPF023622.8E-14313407IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MADSGRREDT EGGGGGGGGG SLGAGRDEVW RAPDVLALPP PTGLGALVQQ QPPHVGQNVV  60
QHSHQYPVAA GLIRHPSPPT MPVQVGFPAY VPPQYTVVPT PAALPPQQQH QHRENFQNWV  120
PSNHNVAALH APGAFQELRP MCSGSAFLHF GQNAASSNMF YQNTLPCSIN SSWPNNNNML  180
RNPVYPSYHP HAAIDDHQAP PFHSNSHDTD QGFQTSFRMD QAFVPASSPF PPVSSSSHIL  240
SSSQISNGPK NAKKAKKSDV KDTPISFRRS DMKIQKNDEL DQTPASEPPS LSQNSESLAV  300
RFNCREYRVI LRKELTNSDV GNIGRIVMPK RDAEAHLPAL NQREGVMVKM DDFKIETTWN  360
FKYRFWPNNK SRMYVLESTG GFVKHHGLTT GDILIIYKSS VSGEFVVRGE KAIKPNAVMP  420
VVDCSCKNEL NNSEECGFAI SLQTKKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A3e-353023984100B3 domain-containing transcription factor LEC2
6j9c_D3e-353023984100B3 domain-containing transcription factor LEC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G36540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0728740.0AK072874.1 Oryza sativa Japonica Group cDNA clone:J023145I07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006653877.10.0PREDICTED: putative B3 domain-containing protein Os04g0676650
SwissprotQ7XKC40.0Y4765_ORYSJ; Putative B3 domain-containing protein Os04g0676650
TrEMBLJ3M2M90.0J3M2M9_ORYBR; Uncharacterized protein
STRINGOB04G36540.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118172835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.12e-36B3 family protein