PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB04G30520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 261aa MW: 29016.7 Da PI: 6.3012 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.6 | 9.2e-16 | 15 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd lv+ +k+ Gg+ +W++ +r g++R++k+c++rw +yl OB04G30520.1 15 KGPWTEEEDRALVEHIKKQGGHvgSWRSLPRAAGLNRCGKSCRLRWTNYL 64 79**********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.6 | 2.6e-17 | 70 | 114 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++ eE+ l+v++++ lG++ W+tIa ++ gRt++++k++w+++ OB04G30520.1 70 RGNFSDEEERLIVRLHAALGNK-WSTIATHLD-GRTDNEIKNYWNTH 114 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-21 | 7 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.32 | 10 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.95E-28 | 12 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-11 | 14 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-13 | 15 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.40E-9 | 17 | 64 | No hit | No description |
PROSITE profile | PS51294 | 26.713 | 65 | 119 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-26 | 68 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.1E-16 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.5E-15 | 70 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.05E-12 | 72 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MGRSPCCCHD AGVKKGPWTE EEDRALVEHI KKQGGHVGSW RSLPRAAGLN RCGKSCRLRW 60 TNYLRPDIKR GNFSDEEERL IVRLHAALGN KWSTIATHLD GRTDNEIKNY WNTHIKKKLL 120 RMGIDPLLSA INSNNDVAAG LMGMANLAAT NAMVSPTSTV ANHQPSYLCD VPSFSGQDMA 180 EQQRLSSSDT TAPPVLIRSS AEPVDHQCCN DAALVPETYP QGVTAIVDWQ MQEFSNLEPL 240 DLELPNLCSL ESDLDPFWRT Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-26 | 15 | 119 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB04G30520.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK243271 | 1e-158 | AK243271.1 Oryza sativa Japonica Group cDNA, clone: J100049K04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169249.1 | 1e-100 | transcription factor MYB39-like | ||||
Refseq | XP_020198492.1 | 1e-100 | transcription factor MYB39-like | ||||
Swissprot | Q9S9Z2 | 3e-64 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | J3M0X7 | 0.0 | J3M0X7_ORYBR; Uncharacterized protein | ||||
STRING | OB04G30520.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6265 | 29 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02940.1 | 2e-67 | myb domain protein 107 |
Publications ? help Back to Top | |||
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