PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB04G23970.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 311aa MW: 34983.1 Da PI: 6.5282

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB04G23970.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	59.1	1.1e-18	1	55	17	71
trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 m+++++++k++k+lWe++s +mre+g+ rsp++C++kw+nl k++kk + +++++ OB04G23970.1 1 MDSHFNTSKSNKHLWEAISGRMREQGYDRSPTMCTDKWRNLLKEFKKARSHSRGG 55 7899*********************************************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	5.32E-20	1	49	No hit	No description
Pfam	PF13837	5.6E-13	3	56	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MDSHFNTSKS NKHLWEAISG RMREQGYDRS PTMCTDKWRN LLKEFKKARS HSRGGAGAVG 60 AGGNCPAKMA CYKEIDDLLK RRGKPAGGHV KSPTVTSNSK IDSYLQFTAD KGFEDANIPF 120 GPVEANGRSL LSVEDRLEPD SHPLALTADA VATNGVNPWN WRDTSTNGGD NQVTFGGRVI 180 LVKWGDYTKR IGIDGTAEAI KEAIKSAFGL RTRRAFWLED EDEVVRSLDR DMPVGTYTLH 240 LDNGMTIKLY MFENDEVRTE DKTFYTEEDF RDFLSRRGWT LLREYSGYRI ADTLDDLRPG 300 VIYEGMRSLG D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	9e-27	1	74	22	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00004	PBM	Transfer from 920224	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB04G23970.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ535489	0.0	AJ535489.3 Oryza sativa Indica Group mRNA for RML1 protein.
GenBank	AK103296	0.0	AK103296.1 Oryza sativa Japonica Group cDNA clone:J033125B02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006653544.1	0.0	PREDICTED: trihelix transcription factor GT-1-like, partial
Swissprot	Q9FX53	1e-127	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	J3LZ22	0.0	J3LZ22_ORYBR; Uncharacterized protein
STRING	OB04G23970.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5631	37	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-128	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]