PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G23370.1
Common NameLOC102722761
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 803aa    MW: 91703.1 Da    PI: 9.2496
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G23370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.73e-2154139190
          FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                   +fY eY++++GF v+k++s++   +g  +++tfvC+k g ++ +      + r+r + +tgCka+++vk ++ +++wev  +eleHnH+++
  OB04G23370.1  54 RFYLEYGYRAGFGVSKRTSHSV--DGVKYRATFVCYKGGIARIKPGL---KARRRLVAKTGCKAMMVVKYNTnENHWEVVFVELEHNHPCN 139
                   5****************99988..9999**************99887...8999*****************999**************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.8E-1954139IPR004330FAR1 DNA binding domain
PfamPF105516.2E-25264357IPR018289MULE transposase domain
PfamPF044341.2E-6533577IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.742545581IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-4556583IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 803 aa     Download sequence    Send to blast
MDTLHSNQYA KSSLPLQLRD TAVSFENNNS VLDKHEIASP QVGMTFETAD LAYRFYLEYG  60
YRAGFGVSKR TSHSVDGVKY RATFVCYKGG IARIKPGLKA RRRLVAKTGC KAMMVVKYNT  120
NENHWEVVFV ELEHNHPCNP EMVRFMMCFK DLPDWQREHR PFNAKTRLNP KIHSGRGRPP  180
NQNKDFMVKK SFSQSNYSIE AAGKAGKLRF AEGDVEALLV FFDKMQAQNS NFFYNWDMDD  240
EGRLKNVCWV DARSRAAYQH FCDVVCFDTV YLTYQFVIPL VAFLGINHHG QFVLLGCGLL  300
GDESPETFSW LFKKWLKCMN DKSPEAIITT HSRPVVKAVA EVFPNTRHRY NLWHIMKELP  360
EMSGRVEDKE AISLRMKKVV FDTITSADFE REWVEMVTQY NLHDNHWLTT LFEERAKWVP  420
AYVKDTFWAG ISTVRRSERL EAFFDGYITP ETTIKTFIEQ FDTAMKLRSD REAYDDFRSF  480
QQRPQVLSGL LFEEQFANVY TINMFQKFQD HLKQLMNVTC TEVSRNGSIV TYTVTVIGKE  540
RKYDYKVMYN SAEKEVWCIC RSFQFKGILC SHALAVLRQE LVMLIPYKYI LDRWRKDYKC  600
PEESKETPIS PKANKATGKG TKPENVREDK VDNLYKHGHQ YFADIVEMGA TDPDAMEYVL  660
SVMKEAKEKV RKFEESRKDK RPGDTPVSTS KRSGKSSRPS HEDGGNGISD STLAATTVAT  720
VAVASSTPIQ AAPTMMAIAP ASATVPAGMF LVPMHPHPMV FPPFTPAVPP VVAPAAPPPA  780
PIANVGDVAS ISTKKRKKRK GNR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1793797KKRKK
2793799KKRKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G23370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7315820.0AL731582.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0022H21, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652411.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
TrEMBLJ3LYW20.0J3LYW2_ORYBR; Uncharacterized protein
STRINGOB04G23370.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-119FAR1-related sequence 6