PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB04G20560.1 | ||||||||
Common Name | LOC102716956 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 201aa MW: 22564.2 Da PI: 5.0497 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 107.9 | 1.2e-33 | 7 | 124 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lppGf+F P+deel+v++L++k++ +++ ++++++ ++ ++Pw+L+ k+ ++ ++wyfFs++ + +ra +g Wk g+d++v+s +g OB04G20560.1 7 LPPGFHFFPSDEELIVHFLRRKASLLPCRP-DIVPTLTLNLYDPWELNGKALQSGNQWYFFSHATQ--------TRASPNGHWKPIGSDETVVS-GG 93 79*************************999.89**************976667789******9754........688999**************.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 +glkktL+f+ g+ +g kt+Wvmhey+l OB04G20560.1 94 CSIGLKKTLIFFMGEPIEGIKTSWVMHEYHL 124 *****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.27E-46 | 3 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 42.048 | 7 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.3E-21 | 8 | 124 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MAGASNLPPG FHFFPSDEEL IVHFLRRKAS LLPCRPDIVP TLTLNLYDPW ELNGKALQSG 60 NQWYFFSHAT QTRASPNGHW KPIGSDETVV SGGCSIGLKK TLIFFMGEPI EGIKTSWVMH 120 EYHLMDGNTD CSNSSTSSSS SKWPHKKKGQ SETESNNWVI CRVFESSYDS QVSFHEEGTE 180 LSCLDEVFLS LDDYDEVSFA K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-34 | 6 | 171 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-34 | 6 | 171 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-34 | 6 | 171 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-34 | 6 | 171 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-34 | 6 | 171 | 19 | 173 | NAC domain-containing protein 19 |
3swm_B | 7e-34 | 6 | 171 | 19 | 173 | NAC domain-containing protein 19 |
3swm_C | 7e-34 | 6 | 171 | 19 | 173 | NAC domain-containing protein 19 |
3swm_D | 7e-34 | 6 | 171 | 19 | 173 | NAC domain-containing protein 19 |
3swp_A | 7e-34 | 6 | 171 | 19 | 173 | NAC domain-containing protein 19 |
3swp_B | 7e-34 | 6 | 171 | 19 | 173 | NAC domain-containing protein 19 |
3swp_C | 7e-34 | 6 | 171 | 19 | 173 | NAC domain-containing protein 19 |
3swp_D | 7e-34 | 6 | 171 | 19 | 173 | NAC domain-containing protein 19 |
4dul_A | 6e-34 | 6 | 171 | 16 | 170 | NAC domain-containing protein 19 |
4dul_B | 6e-34 | 6 | 171 | 16 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB04G20560.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK243585 | 0.0 | AK243585.1 Oryza sativa Japonica Group cDNA, clone: J100082O14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006652313.1 | 1e-150 | PREDICTED: NAC transcription factor NAM-B2-like | ||||
Swissprot | Q8GWK6 | 8e-59 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | J3LY31 | 1e-148 | J3LY31_ORYBR; Uncharacterized protein | ||||
STRING | OB04G20560.1 | 1e-149 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3667 | 36 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 7e-60 | xylem NAC domain 1 |
Link Out ? help Back to Top | |
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Entrez Gene | 102716956 |
Publications ? help Back to Top | |||
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