PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G16320.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 376aa    MW: 42661.8 Da    PI: 9.9631
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G16320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.77.7e-121011791495
                   T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
            B3  14 grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                   + +++p kf++++  +++ +s +  + ++ g+ W++ l  +k ++++++ +GW +F + +g+ +gD++++++ g+  f  +v 
  OB04G16320.1 101 DKMRIPDKFVQHYiTEEHLNSNMAYISSPPGKFWRIGL--EKDRSGVFFCGGWLQFLSFHGVSQGDVLLLRYRGNLVF--KVE 179
                   4699******88895566788899**************..*******************************9876555..555 PP
2B3672.7e-21268365186
                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.............-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.............rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFk 83 
                   ++k+ ++++ l++++++l  +f++++g  k++++tlt+e e               rsWev    r++s + y+l++GWk+F+++ngLk+gD++vF+
  OB04G16320.1 268 WIKKKINEYILERCLVSLALTFCSSIGFAKKSTITLTMEMEMTsrggggggnssrrRSWEVAG--RRYSHAcYLLGDGWKRFCHDNGLKVGDVCVFT 362
                   78999*********************555555555554444334455****************..****999************************* PP

                   E-S CS
            B3  84 ldg 86 
                   +++
  OB04G16320.1 363 VVH 365
                   766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.30E-7160No hitNo description
PROSITE profilePS5086310.63162IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-10364IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.0E-10564IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-1686186IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.82E-1887186IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.68888184IPR003340B3 DNA binding domain
CDDcd100177.46E-1289181No hitNo description
SMARTSM010196.6E-991184IPR003340B3 DNA binding domain
PfamPF023621.5E-9101176IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-14263375IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-15264374IPR015300DNA-binding pseudobarrel domain
PfamPF023621.6E-14268366IPR003340B3 DNA binding domain
SMARTSM010199.3E-6269374IPR003340B3 DNA binding domain
PROSITE profilePS5086311.152324376IPR003340B3 DNA binding domain
CDDcd100171.90E-7334362No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MAVILSPLSK FWRIELQKDQ LGMIFRGGWX EYAAAHGLGV GWFVVLRHEG GGVLTAKVFD  60
TTCCLKEFGD STPVLTTING RARGTSCKPQ FLSILLPDFM DKMRIPDKFV QHYITEEHLN  120
SNMAYISSPP GKFWRIGLEK DRSGVFFCGG WLQFLSFHGV SQGDVLLLRY RGNLVFKVEF  180
FGPNGCRKDL KTDDTRVQQY AGIHQDEPFR RRKCIEKKRK IDEDNGNQHG TASSSGRKDS  240
IKKRRTDGSE RERRKKSQSI YEIGPPSWIK KKINEYILER CLVSLALTFC SSIGFAKKST  300
ITLTMEMEMT SRGGGGGGNS SRRRSWEVAG RRYSHACYLL GDGWKRFCHD NGLKVGDVCV  360
FTVVHTTLWH VGIERC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241255KKRRTDGSERERRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G16320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691403.10.0PREDICTED: putative B3 domain-containing protein Os04g0346900
SwissprotQ7XS751e-149Y4469_ORYSJ; Putative B3 domain-containing protein Os04g0346900
TrEMBLJ3LWV70.0J3LWV7_ORYBR; Uncharacterized protein
STRINGOB04G16320.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.14e-14B3 family protein