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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
OB04G11840.1 |
| Common Name | B26-3 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family |
C2H2 |
| Protein Properties |
Length: 146aa MW: 15789.9 Da PI: 10.0283 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OB04G11840.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 14.9 | 7.5e-05 | 74 | 97 | 1 | 23 |
EEETTTT.EEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23
y+C+ Cg k F s+L++H + +
OB04G11840.1 74 YVCGRCGgKQFAVLSDLRTHEKHC 97
9*******************9876 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 146 aa
Download sequence Send
to blast |
MRAHGDEYKT SAALSNPSGP SSSSSSGAGA GKAKCYSCPA EGCRWNRRHP RFQALKSVVC 60
AKNHYRRSHC PKMYVCGRCG GKQFAVLSDL RTHEKHCGEL RWLCSCGTFF SRKDKLMGHV 120
ALFAGGHAPV PVAAASPSTT ERSSRD
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AL442113 | 1e-135 | AL442113.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0806H05, complete sequence. |
| GenBank | CP012612 | 1e-135 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
| GenBank | CT837928 | 1e-135 | CT837928.2 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA123A12, full insert sequence. |
