PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G47710.1
Common NameLOC102704694
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 785aa    MW: 89429.9 Da    PI: 6.1716
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G47710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1576.4e-1840124191
          FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                   +fY++YA ++GF v+++ks+ + + g + +  +vC+++g  +++        + r++ +t+C+a+++ ++++dg  ++t+++l+HnH+l+p
  OB03G47710.1  40 NFYKRYALRTGFGVCVKKSSFT-KAGLCRRLVLVCNRWGDGKDDACY-----QARPTAKTNCQATVVARLWSDGLLHLTDVSLDHNHALNP 124
                   6*****************9998.6777****************9999.....999*********************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.4E-1640124IPR004330FAR1 DNA binding domain
PfamPF105512.4E-27227319IPR018289MULE transposase domain
PROSITE profilePS509669.31508544IPR007527Zinc finger, SWIM-type
PfamPF044349.1E-4521540IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 785 aa     Download sequence    Send to blast
MVEAAAECAE LDASIAPSPY GDERTPRDGM AFKSYEEVLN FYKRYALRTG FGVCVKKSSF  60
TKAGLCRRLV LVCNRWGDGK DDACYQARPT AKTNCQATVV ARLWSDGLLH LTDVSLDHNH  120
ALNPSAARFL RCYKTLPSGM SKDLVVRAAR GECSTSGDVD VPVFDDWGRL KIVEDDVVAI  180
NGFFAEMQSK QANFFYVMDF YVEGHLRSVF WADSRSRAAH QYFNDAVWID TTCLRNKFDI  240
PLVLFLGVNH HGELVLLGCG LLSDESTESF LWLLKSWLTC MKGWPPNAIV TDECAAIKAA  300
VREVFPNARH RISDWHVLRS ISEKLGESAQ FEEMKTELET IIYDSLKDDE FEARWKNLVS  360
RFGLQDNEWI TFLYENRPLW VPAFLKDTFW AGLSTVNHHE SPNAFFEDSI NPETKLVTFL  420
SSYVNLLQNK YKMEEDDDLE SLSTNRVLVS KFPMEEQLSR LYTFKMFTKL QNELNATMNC  480
EVQLDGSTSS IVVIDLAESG REMVNKKYEV VHCMETDRME CNCGLFQFSG IVCRHTLSVL  540
KWQQIFDIPP CYVLNRWRSD FKQLHALDNP WKDLVASNHI ERYDYVSLQC LRLVEIGASS  600
DEKYHHALKL IRDIQRTLLD DNLCRELEQK LTPSERAING DSHMQAGSSE GGPAKKRRGR  660
PPKKSKDTNV ESMSNQYAHK DSLLVSSDVS QKDAFHSSST ASNLGNHART HGVVDLMEEV  720
NPNELSFDSR YGVQSSHSHH YGNQLHPSNT LQFGQPTSAA EHSRGVQWVY PNIFQDDQVP  780
YGRRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G47710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0703640.0AK070364.1 Oryza sativa Japonica Group cDNA clone:J023050I08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652013.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
TrEMBLJ3LUP50.0J3LUP5_ORYBR; Uncharacterized protein
STRINGOB03G47710.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-120FAR1-related sequence 6