PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G45600.1
Common NameLOC102704875
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 313aa    MW: 35041.5 Da    PI: 7.1471
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G45600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.42.3e-52181431128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                   lppGfrFhPtd+elv +yL++k++g++l++  +i+evd+yk++PwdLp+++  + +ewyfF++rd+ky++g+r+nra+ +gyWkatg dk+v   +g
  OB03G45600.1  18 LPPGFRFHPTDDELVEHYLCRKAAGQRLPV-PIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAP-RG 112
                   79****************************.88***************8777899*************************************99.99 PP

           NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                   ++ g+kk Lvfy g+ap+g+ktdW+mheyrl
  OB03G45600.1 113 RTLGIKKALVFYAGKAPRGVKTDWIMHEYRL 143
                   9****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-6414171IPR003441NAC domain
PROSITE profilePS5100560.37718171IPR003441NAC domain
PfamPF023653.0E-2719143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGMAVRRRER DAEAELNLPP GFRFHPTDDE LVEHYLCRKA AGQRLPVPII AEVDLYKFDP  60
WDLPERALFG AREWYFFTPR DRKYPNGSRP NRAAGNGYWK ATGADKPVAP RGRTLGIKKA  120
LVFYAGKAPR GVKTDWIMHE YRLADAGRAA AGAKKGSLRL DDWVLCRLYN KKNEWEKMQQ  180
GKEVKEEASD MVTSQSHSHT HSWGETRTPE SEIVDNDPFP ELDSFPAFQP APPAMMVPKQ  240
ESVDDASGER ANAAIPRNNS SLFVDLSYDD IQGMYSGLDM LPPGDDFYSS LFASPRVRGA  300
TPRAGAGMGM APF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-11411771174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that possesses transactivation activity (PubMed:16924117, PubMed:20632034). Transcription activator involved in response to abiotic stresses. Plays a positive role during dehydration and salt stress. Binds specifically to the 5'-CATGTG-3' motif found in promoters of stress-responsive genes (PubMed:16924117). {ECO:0000269|PubMed:16924117, ECO:0000269|PubMed:20632034}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G45600.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stresss, salt stress and cold stress (PubMed:16924117, PubMed:20632034). Induced by abscisic acid (ABA) (PubMed:16924117). Induced by methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:16924117, ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5761360.0KM576136.1 Oryza rufipogon stress-induced transcription factor NAC1 (SNAC1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650786.10.0PREDICTED: NAC domain-containing protein 67-like
SwissprotQ75HE50.0NAC2_ORYSJ; NAC domain-containing protein 2
TrEMBLJ3LU340.0J3LU34_ORYBR; Uncharacterized protein
STRINGOB03G45600.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44143071
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.16e-80NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  3. Chen Q,Wang Q,Xiong L,Lou Z
    A structural view of the conserved domain of rice stress-responsive NAC1.
    Protein Cell, 2011. 2(1): p. 55-63
    [PMID:21337010]