PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB03G38320.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TCP | ||||||||
Protein Properties | Length: 257aa MW: 27752.6 Da PI: 9.446 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 131.8 | 6.3e-41 | 1 | 143 | 17 | 136 |
TCP 17 gRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........................ 88 +RdRR+Rls+++a++fF+Lqd+LGfdk+skt++WLl+++k+ai e++++ +++s c e++sss s++ ++++ OB03G38320.1 1 MRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNMSKAAIREIMSD--DASSVCeEDGSSSLSVDGKQHSnpadaggggehkgahnhsngkkpa 95 7************************************************..6666798777777777744444567888888888888999999997 PP TCP 89 kaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136 k +++aa++k++++ a+++ ++kesrakar+rarertrek+r+++++ OB03G38320.1 96 KPRRAAATPKPPRRLANAHPVPDKESRAKARERARERTREKNRMRWVT 143 77777779*************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.7E-36 | 1 | 139 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.697 | 1 | 46 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 12.211 | 119 | 136 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MRDRRMRLSL DVARKFFALQ DMLGFDKASK TVQWLLNMSK AAIREIMSDD ASSVCEEDGS 60 SSLSVDGKQH SNPADAGGGG EHKGAHNHSN GKKPAKPRRA AATPKPPRRL ANAHPVPDKE 120 SRAKARERAR ERTREKNRMR WVTLASAISV EAATAAAAAA EDKSPTSPNN LNHSSSTNLV 180 STELEEGSSS TLHNGGGGGS GSRMQEISVA SEPSDVIMAF ANGAYGDSSN YYLQQQQQQQ 240 DQWELGGVVF ANSRHYC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that functions as a negative regulator of lateral branching, presumably through its expression in axillary buds (PubMed:12581309, PubMed:20547591). Involved in the fine tuning of shoot branching. May function as an integrator of multiple signaling pathways to regulate the development of axillary buds. Works partially downstream of strigolactones to inhibit bud outgrowth (PubMed:20547591). Binds to MADS57 to suppress the negative regulation of D14 by MADS57 and balance the expression of D14 for tillering (PubMed:23463009). {ECO:0000269|PubMed:12581309, ECO:0000269|PubMed:20547591, ECO:0000269|PubMed:23463009}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB03G38320.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB491563 | 0.0 | AB491563.1 Oryza brachyantha tb1 gene for teosinte branched 1, complete cds, strain: W1401. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015690035.1 | 0.0 | PREDICTED: transcription factor TEOSINTE BRANCHED 1-like | ||||
Swissprot | Q8LN68 | 1e-148 | TB1_ORYSJ; Transcription factor TB1 | ||||
TrEMBL | J3LS06 | 0.0 | J3LS06_ORYBR; Uncharacterized protein | ||||
STRING | OB03G38320.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7253 | 36 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 2e-17 | TCP domain protein 12 |