PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB03G35630.1 | ||||||||
Common Name | LOC107303954 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 196aa MW: 21839.3 Da PI: 3.92 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 65.8 | 7.4e-21 | 34 | 88 | 4 | 55 |
G2-like 4 lrWtpeLHerFveaveqLGGsekAtPkti...lelmkvkgLtlehvkSHLQkYRl 55 lrW+ +LH+ Fveav+ GG+ +A P ++ +++m+v g+t +++kSHLQkYR OB03G35630.1 34 LRWSDDLHKIFVEAVAFQGGPYEAKPTAVketMQTMGVTGITTQNIKSHLQKYRE 88 89************************7772226678899***************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.15E-11 | 29 | 91 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-18 | 30 | 89 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.8E-16 | 34 | 88 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MSNSKPAQDD DASYMSSILA SRIIWAMQAT RSYLRWSDDL HKIFVEAVAF QGGPYEAKPT 60 AVKETMQTMG VTGITTQNIK SHLQKYRESF NSGAGSLQDH DVQGTISPSK EALDLTSEMV 120 RDNDAILAEM EMVNNMLMDD NIEVVETNIS VDDMQDLMNE IMLIEHNDTG IISESALDEY 180 MDDLAGYAFD LMDSTT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB03G35630.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015691090.1 | 1e-143 | PREDICTED: uncharacterized protein LOC107303954 isoform X1 | ||||
Refseq | XP_015691091.1 | 1e-143 | PREDICTED: uncharacterized protein LOC107303954 isoform X1 | ||||
TrEMBL | J3LR87 | 1e-142 | J3LR87_ORYBR; Uncharacterized protein | ||||
STRING | OB03G35630.1 | 1e-143 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15499 | 12 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 5e-15 | G2-like family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 107303954 |