PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G32710.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 173aa    MW: 19613.9 Da    PI: 9.7955
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G32710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.59.8e-101351543
                  SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
        SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                  ++  rq  + kR + ++KK  ELS L +++++++++s++
  OB03G32710.1 13 DDATRQAIYKKRCKDLMKKVRELSSLHGVDACIVVYSED 51
                  67789999*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006611.129150IPR002100Transcription factor, MADS-box
SMARTSM004322.4E-4161IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.76E-16495IPR002100Transcription factor, MADS-box
PfamPF003191.7E-111351IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MACKKVNLQH TTDDATRQAI YKKRCKDLMK KVRELSSLHG VDACIVVYSE DKPQVPELWP  60
SMAATSRIIE RFKSLPLADQ HKNMTNLENF LKQCIAELQE KVDKLEKKNE QRETMLLLHK  120
ALAGRLPSFV GLTTEQLTRL NSMVHAKLTS VEERLKVLRA GSLSLQGCGM AHT
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G32710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689955.11e-118PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLJ3LQE51e-125J3LQE5_ORYBR; Uncharacterized protein
STRINGOB03G32710.11e-126(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.16e-26AGAMOUS-like 80