PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB03G30160.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 268aa MW: 29139.6 Da PI: 4.8283 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.7 | 1.7e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed+ lv +++++G g W + +++ g++R++k+c++rw++yl OB03G30160.1 14 RGAWTATEDDVLVSYIAEHGEGKWGALPNRAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.1 | 2.6e-15 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E+el+++++++lG++ W++Ia +++ gRt++++k++w++ OB03G30160.1 67 RGNISGDEEELILRLHTLLGNR-WSLIAGRLP-GRTDNEIKNYWNST 111 6777889***************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-21 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.479 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.52E-27 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.25E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 22.999 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-23 | 65 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.8E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-12 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.83E-10 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006633 | Biological Process | fatty acid biosynthetic process | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0010023 | Biological Process | proanthocyanidin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MGRKPCCAKE GLNRGAWTAT EDDVLVSYIA EHGEGKWGAL PNRAGLKRCG KSCRLRWLNY 60 LRPGIKRGNI SGDEEELILR LHTLLGNRWS LIAGRLPGRT DNEIKNYWNS TLSKRATRRR 120 ITTPPPMPAA TSSASRRRSP EPRAVVAAPQ AVLLQQQQQE LAGVDDDDLL PAVCIDLDLD 180 DIELGLDGFL SPWNGGGHDA AGAGPTTPIG YDLAGGGEAV DLEALLLGQL EAGEDVDGDR 240 HHQQQQQQEV PSSSPGNEDD YLELAPWL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-24 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB03G30160.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | D88619 | 1e-142 | D88619.1 Oryza sativa mRNA for OSMYB3, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006651492.1 | 1e-171 | PREDICTED: myb-related protein Zm38-like | ||||
TrEMBL | J3LPP0 | 0.0 | J3LPP0_ORYBR; Uncharacterized protein | ||||
STRING | OB03G30160.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 5e-58 | MYB family protein |