PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G25680.1
Common NameLOC102716387
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 382aa    MW: 41041.3 Da    PI: 9.1837
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G25680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.84.4e-5391401128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 
                   lppGfrFhPtdeel+v+yL+++++++++++ ++i++vdiyk++Pw Lp+k++ ++kewyfFs+rd+ky++g r+nra+ sgyWkatg+dk+++s+  
  OB03G25680.1   9 LPPGFRFHPTDEELIVHYLRNRAASSPCPV-SIIADVDIYKFDPWVLPSKAAYGDKEWYFFSPRDRKYPNGIRPNRAAGSGYWKATGTDKPIHSSgg 104
                   79****************************.89***************888889****************************************988 PP

           NAM  96 ...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++e vg+kk Lvfykgr pkg+kt+W+mheyrl
  OB03G25680.1 105 gggSNESVGVKKALVFYKGRPPKGTKTNWIMHEYRL 140
                   8877778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-645174IPR003441NAC domain
PROSITE profilePS5100561.0799174IPR003441NAC domain
PfamPF023652.6E-2710140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MVLSNPAMLP PGFRFHPTDE ELIVHYLRNR AASSPCPVSI IADVDIYKFD PWVLPSKAAY  60
GDKEWYFFSP RDRKYPNGIR PNRAAGSGYW KATGTDKPIH SSGGGGGSNE SVGVKKALVF  120
YKGRPPKGTK TNWIMHEYRL AAADAHAANT YRPMKFRNAS MRLDDWVLCR IYKKSSHSQP  180
TGVPPLSDHE QDEPGALEEN PPLYAPSSSS SAAMILQGGA FPALNAAATQ RTMMQKIPSI  240
SDLLNEYSLS QLFDDGGAAA LDMTRQPDNQ HHHHAALLGH PVMNHFLVNS SMAQLAQMDL  300
SPATASTSAA AGAHVEAAAT GKRKRSDAEP QTSQSPPAAA AAAKKANGSC VGATFQIGNA  360
LQLQGSLGLG HQMLLHSNMG MN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A8e-76917920173NAC domain-containing protein 19
3swm_B8e-76917920173NAC domain-containing protein 19
3swm_C8e-76917920173NAC domain-containing protein 19
3swm_D8e-76917920173NAC domain-containing protein 19
3swp_A8e-76917920173NAC domain-containing protein 19
3swp_B8e-76917920173NAC domain-containing protein 19
3swp_C8e-76917920173NAC domain-containing protein 19
3swp_D8e-76917920173NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00221DAPTransfer from AT1G69490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G25680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2435140.0AK243514.1 Oryza sativa Japonica Group cDNA, clone: J100075D15, full insert sequence.
GenBankJN9823130.0JN982313.1 Oryza sativa Japonica Group NAC transcription factor 58 (NAC58) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650022.10.0PREDICTED: NAC domain-containing protein 72-like
TrEMBLJ3LNE20.0J3LNE2_ORYBR; Uncharacterized protein
STRINGOB03G25680.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.13e-85NAC-like, activated by AP3/PI