PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G25660.1
Common NameLOC102715831
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 387aa    MW: 42789.2 Da    PI: 5.4259
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G25660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM29.52.1e-092147127
           NAM  1 lppGfrFhPtdeelvveyLkkkvegkk 27
                  lppGfrFhPtdee+v++yL++k+ +++
  OB03G25660.1 21 LPPGFRFHPTDEEIVSHYLTPKALDHR 47
                  79********************98876 PP
2NAM175.71.3e-54541811129
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                   lppGfrFhPtdee+v++yL++k+ +++++   vi evd++k+ePw Lp ++k +ekewyfF+++d+ky+tg+r+nrat+sgyWkatgkdke+++ +g
  OB03G25660.1  54 LPPGFRFHPTDEEIVSHYLTPKALDHRFSS-GVIGEVDLNKCEPWFLPGMAKMGEKEWYFFCHKDRKYPTGTRTNRATESGYWKATGKDKEIFRGRG 149
                   79*************************999.99***************888899******************************************* PP

           NAM  98 elvglkktLvfykgrapkgektdWvmheyrle 129
                    lvg+kktLvfy grap+gekt Wvmhe+rle
  OB03G25660.1 150 ILVGMKKTLVFYLGRAPRGEKTGWVMHEFRLE 181
                   *****************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-101549IPR003441NAC domain
PROSITE profilePS510056.3452142IPR003441NAC domain
PfamPF023651.7E-62244IPR003441NAC domain
SuperFamilySSF1019415.89E-6350204IPR003441NAC domain
PROSITE profilePS5100558.07254204IPR003441NAC domain
PfamPF023658.1E-2955180IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:1900057Biological Processpositive regulation of leaf senescence
GO:1903648Biological Processpositive regulation of chlorophyll catabolic process
GO:0005634Cellular Componentnucleus
GO:0000975Molecular Functionregulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MSEVSVVNQP EVEETAAVLD LPPGFRFHPT DEEIVSHYLT PKALDHRLAA GLDLPPGFRF  60
HPTDEEIVSH YLTPKALDHR FSSGVIGEVD LNKCEPWFLP GMAKMGEKEW YFFCHKDRKY  120
PTGTRTNRAT ESGYWKATGK DKEIFRGRGI LVGMKKTLVF YLGRAPRGEK TGWVMHEFRL  180
EGKLPNQLPR SAKDQWAVCK VFNKELALAA KNGPMAVTVT TTDDEEIEPD FLSEFIDPEL  240
PPLTDPSFVA DVDGADDTKG GTTSTSGKAA VAAYHATLGG SYQQVKVEET LPLPYLHQPQ  300
RALYSGQYFS LPAVHPGHLT PSAIRKYCKA EQVSGQTSAL SVSRDTGLST DPNAAGCAEI  360
SSAVSQPFPE FDDPILSIDE FWNYIHA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-525220518169NAC domain-containing protein 19
3swm_B1e-525220518169NAC domain-containing protein 19
3swm_C1e-525220518169NAC domain-containing protein 19
3swm_D1e-525220518169NAC domain-containing protein 19
3swp_A1e-525220518169NAC domain-containing protein 19
3swp_B1e-525220518169NAC domain-containing protein 19
3swp_C1e-525220518169NAC domain-containing protein 19
3swp_D1e-525220518169NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00332DAPTransfer from AT3G04060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G25660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0659890.0AK065989.1 Oryza sativa Japonica Group cDNA clone:J013046E14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689877.10.0PREDICTED: NAC domain-containing protein 100-like
TrEMBLJ3LNE00.0J3LNE0_ORYBR; Uncharacterized protein
STRINGOB03G25660.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP186238104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04060.12e-88NAC domain containing protein 46