PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G21750.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 447aa    MW: 47997.4 Da    PI: 8.9068
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G21750.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.3e-05202225123
                   EEETTTTEEESSHHHHHHHHHH.T CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                   ++C+ Cg++ s + +L+ H+ + H
  OB03G21750.1 202 FPCKVCGEVLSKPQQLELHQAMkH 225
                   89******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.037202230IPR007087Zinc finger, C2H2
PROSITE patternPS000280204225IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.90.228.103.6E-6227446IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563992.3E-8227282No hitNo description
SuperFamilySSF563992.3E-8321446No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MAGGGRCSFL LRGFVSLFFL LFLHIGHAGC CFSTGSSTQT LEEDDAAHGA DGRGGGGGKR  60
RKISPLAFSP SVASSTVADE RARVRRRQVS SLATSFRFYL HRIFSYSSGA KNGSVPAAEE  120
EDEAVTTTVS SPLAQSSSLP HRQASVVLST PSSPCASPFL SPLSPQSLSI TPVVPSSPHN  180
RQLPQATTRQ SSRSFAARGD VFPCKVCGEV LSKPQQLELH QAMKHSLSEL SHVDSSMNII  240
RMIFLAGWKP AAGEPPSVRR ILRIHHNPRA LARFEEYRDL VRARAAPPRA GXXXXXXXXX  300
XXXXXXXXXX XXYCSTMLCT LGAGVCGSPY CCTCSILRHG FAGKQADVDG VATYSSGRAA  360
HASLPEDVER EFAFLQVRRA MLVCRVVAGR VGRGAADEKV AYDSMVPPLL PTSSSSSAAA  420
ARGDDDVELL VFNPRAVLPC FVIIYSC
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G21750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1352050.0AC135205.4 Oryza sativa Japonica Group chromosome 3 clone OJ1012B02, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689840.10.0PREDICTED: uncharacterized protein LOC102703476
TrEMBLJ3LM990.0J3LM99_ORYBR; Uncharacterized protein
STRINGOB03G21750.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105173037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.18e-47C2H2 family protein