PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G20170.1
Common NameLOC102720962
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 376aa    MW: 40537.7 Da    PI: 9.6376
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G20170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_163.73.4e-20292354163
                   XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                   e+elkr++rkq+NRe+ArrsR+RK+ae ee +++++ L++eN++Lk+el++l++++ +l+se+
  OB03G20170.1 292 ERELKRQKRKQSNRESARRSRLRKQAEWEEVANRADLLKQENSSLKEELKQLQEKCNSLTSEN 354
                   89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.7E-281100IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165965.7E-11139260No hitNo description
Gene3DG3DSA:1.20.5.1702.4E-15287350No hitNo description
SMARTSM003381.4E-19292356IPR004827Basic-leucine zipper domain
PfamPF001706.9E-18292354IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.61294357IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-9295351No hitNo description
CDDcd147026.10E-21297348No hitNo description
PROSITE patternPS000360299314IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MGKGEVATRS KSQKSSATQN EQSTPTNPPT AYPDWSQFQA YYNPAGTAPM TPPAFFHPNM  60
APSPQGHPYM WGPQMMPPYG TPPPYAAMYA QGTPYQQAPM LPGSHPYSPY PGQSPNGAVQ  120
TPTSAGGTET DKSSKSKRKT PLKRSKGSLG NLDVAATRNK KTPAKPSASS SNEGSSQSES  180
GSGSSSEGSS TNSKSGSRKE GSEHDQGNDA SNKGATVQSS AVEPVQASTG PVVLNPMMPY  240
WPVPPPMAGP GMDYWGTPAS VPMHNKVIAA PSSAPSSNSR DIVLSDPAIQ DERELKRQKR  300
KQSNRESARR SRLRKQAEWE EVANRADLLK QENSSLKEEL KQLQEKCNSL TSENTDLHEK  360
LKELEGEKSN GNWYKE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1308314RRSRLRK
2308315RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G20170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0665630.0AK066563.1 Oryza sativa Japonica Group cDNA clone:J013071G08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649707.10.0PREDICTED: bZIP transcription factor 16-like isoform X1
RefseqXP_015690961.10.0PREDICTED: bZIP transcription factor 16-like isoform X1
RefseqXP_015690962.10.0PREDICTED: bZIP transcription factor 16-like isoform X1
SwissprotQ501B29e-79BZP16_ARATH; bZIP transcription factor 16
TrEMBLJ3LLU10.0J3LLU1_ORYBR; Uncharacterized protein
STRINGOB03G20170.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115063238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.14e-50basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]