PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OB03G19910.1 | ||||||||
Common Name | LOC102714166 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 247aa MW: 27240.7 Da PI: 5.1794 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52 | 1.6e-16 | 19 | 62 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 W++eEde+l + v+q ++W Ia+ ++ gRt+k+c++rw+++l OB03G19910.1 19 WSKEEDERLREMVRQNKAKDWGVIAAAFP-GRTDKSCRLRWRQHL 62 *****************************.************996 PP | |||||||
2 | Myb_DNA-binding | 45.4 | 1.8e-14 | 69 | 113 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +++T++Ed +v++ + ++ W+tIa+ ++ gR+++ +k+rw+++l OB03G19910.1 69 QPFTPDEDRTIVELQLVHRNR-WSTIAAFLP-GRSDNAVKNRWNTHL 113 79*******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.693 | 11 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.61E-28 | 13 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-15 | 15 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.8E-15 | 19 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.18E-15 | 19 | 62 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-22 | 19 | 70 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.0E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.33 | 69 | 117 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.5E-12 | 69 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.99E-11 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-20 | 71 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 247 aa Download sequence Send to blast |
MALEGEGEGG GPPAKKAGWS KEEDERLREM VRQNKAKDWG VIAAAFPGRT DKSCRLRWRQ 60 HLDPSVDAQP FTPDEDRTIV ELQLVHRNRW STIAAFLPGR SDNAVKNRWN THLRKRRAQD 120 DGQQQQQQPL ERAPACLPLF PLTPGFHHST VRPMPVGENA PGPERSALPE CLELFPLSLG 180 DVMDNATGAA AMYVDTDGIC SLTEMRLSPP AGDVDIGAVC SPPDTESRLA PATVVFDAMP 240 LQAFWVE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-28 | 10 | 116 | 1 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | OB03G19910.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC137696 | 1e-108 | AC137696.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0049C20, from chromosome 3, complete sequence. | |||
GenBank | AP014959 | 1e-108 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006651200.1 | 0.0 | PREDICTED: transcriptional activator Myb-like | ||||
TrEMBL | J3LLR5 | 0.0 | J3LLR5_ORYBR; Uncharacterized protein | ||||
STRING | OB03G19910.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4960 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G50060.1 | 2e-32 | myb domain protein 77 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 102714166 |