PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G16110.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 297aa    MW: 33012.9 Da    PI: 7.8269
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G16110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-19100150155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   ++y+GVr ++ +grW+AeIrdp++    +r++lg++g+aeeAa a+++ +++++g
  OB03G16110.1 100 KKYRGVRCRP-SGRWAAEIRDPRK---GRRVWLGTYGSAEEAAMAYDREARRIRG 150
                   59*****999.7*********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.41E-27100158No hitNo description
PROSITE profilePS5103222.023101158IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-28101158IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-21101159IPR016177DNA-binding domain
SMARTSM003803.5E-33101164IPR001471AP2/ERF domain
PfamPF008471.3E-12101150IPR001471AP2/ERF domain
PRINTSPR003671.8E-7102113IPR001471AP2/ERF domain
PRINTSPR003671.8E-7124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MCGGAILAEF IPARVHRSLT AAELLPEASS SAERRPARKR KASSSHDDFE AEFELFEDND  60
DDAELELSDE EEALAVPYSD VSSSSRRRPR MAAGRETSGK KYRGVRCRPS GRWAAEIRDP  120
RKGRRVWLGT YGSAEEAAMA YDREARRIRG QAARLNFPRP REGGCSPRRT TNRPRWAIDL  180
NLPAAVSDDD DMAVDAAVAG NAGRAGRGSE PVDSKIKKLI KHGPHVESAM PPELIMEDAS  240
CSSAARGALQ LQYAALISDC DRELEEIAAL ERDVERRRRQ VCEQRRHFVR KASLLLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-1999158363ATERF1
3gcc_A8e-1999158363ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G16110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2297409e-68AC229740.1 Oryza minuta clone OM__Ba0228D20, complete sequence.
GenBankAC2297619e-68AC229761.1 Oryza minuta clone OM__Ba0159K04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006651102.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like
TrEMBLJ3LKN50.0J3LKN5_ORYBR; Uncharacterized protein
STRINGOB03G16110.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136642229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.16e-25ERF family protein