PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G12640.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 277aa    MW: 31146.1 Da    PI: 9.7734
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G12640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.36.6e-49161423128
           NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kg 97 
                   pGfrFhPt+eel+++yL + + gkkl++ ++i +++iy+++PwdLp ++k +e+ewyfF++rd+k+ +g r+nr+t++g+Wkatg+d+++ s+   +
  OB03G12640.1  16 PGFRFHPTEEELLDFYLSRVALGKKLQF-DIIGTLNIYRHDPWDLPGMAKIGEREWYFFVPRDRKAGNGGRPNRTTQRGFWKATGSDRAIRSSgdPK 111
                   9**************************9.99***************888999****************************************97667 PP

           NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                   +++glkktLvfy+grap+g+ktdWvm+eyrl
  OB03G12640.1 112 RVIGLKKTLVFYQGRAPRGTKTDWVMNEYRL 142
                   78***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-5810167IPR003441NAC domain
PROSITE profilePS5100555.04814167IPR003441NAC domain
PfamPF023651.3E-2416142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0010200Biological Processresponse to chitin
GO:0045792Biological Processnegative regulation of cell size
GO:0048281Biological Processinflorescence morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MAAVAGTSME VDQDLPGFRF HPTEEELLDF YLSRVALGKK LQFDIIGTLN IYRHDPWDLP  60
GMAKIGEREW YFFVPRDRKA GNGGRPNRTT QRGFWKATGS DRAIRSSGDP KRVIGLKKTL  120
VFYQGRAPRG TKTDWVMNEY RLPDYGAGHA APPPPKEDMV LCKIYRKATP LKELEQRASA  180
MEEMQRRSSQ GDYTARAYLV HDASPSTGDE YFSSDDVHDS GYLIPSSSSS PAPSGHSSKN  240
GGAPREAKKE EADVTNLLRL RFKIFKFMFA VNSNNRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-501616717168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G12640.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1070900.0AK107090.1 Oryza sativa Japonica Group cDNA clone:002-121-G12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690518.10.0PREDICTED: NAC domain-containing protein 67 isoform X2
SwissprotQ10S651e-155NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLJ3LJN80.0J3LJN8_ORYBR; Uncharacterized protein
STRINGOB03G12640.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP177038105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.12e-86NAC domain containing protein 36
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]