PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G12400.1
Common NameLOC102699851
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 211aa    MW: 22303.2 Da    PI: 5.7766
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G12400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.24.8e-18169203135
          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                   C +C+tt+Tp+WR gp+g+ t CnaCGl+yr+++l
  OB03G12400.1 169 CGHCNTTETPQWRTGPEGPGTFCNACGLRYRLNNL 203
                   9******************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.719163211IPR000679Zinc finger, GATA-type
SMARTSM004018.4E-14163210IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.42E-13165206No hitNo description
Gene3DG3DSA:3.30.50.102.9E-14167202IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.48E-10168195No hitNo description
PfamPF003208.0E-16169203IPR000679Zinc finger, GATA-type
PROSITE patternPS003440169194IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MRKPTPPCVL LLDLVDVDDV PVVDGEGLCC PDDPLDEVMS CLPAIDTFME GAGLDCRSPT  60
PAAVDADAGV GGGEAEQVHE DVAAPESRSQ RALDAGVNEE FAPIVDIPSS AKKPRGRPAG  120
KSRKRAWSLV PPRLDTADAG SSHREVPGGG KQPGLAKRRR KCNGEGKTCG HCNTTETPQW  180
RTGPEGPGTF CNACGLRYRL NNLLLTARRP A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111123KKPRGRPAGKSRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G12400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006651006.11e-151PREDICTED: GATA transcription factor 12-like
TrEMBLJ3LJL41e-150J3LJL4_ORYBR; Uncharacterized protein
STRINGOB03G12400.11e-151(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127772434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-12GATA transcription factor 9