PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G44540.1
Common NameLOC102703556
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 636aa    MW: 69999.1 Da    PI: 4.3132
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G44540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.18.5e-50151511128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkya.........tgkrknratksgyWkat 86 
                   l+pGfrFhPtdeelv++yL+++++g++l++ ++i+evd+y++ePwdLp  +++++++ +wyfF++ d+k +          g+r+nrat +gyWk+t
  OB02G44540.1  15 LAPGFRFHPTDEELVSYYLRRRIQGRRLRI-DAIAEVDLYRLEPWDLPslSRIRSRDAQWYFFARLDRKVTgagaggrggPGNRTNRATPRGYWKTT 110
                   579***************************.99***************5448999999***********99777777665567************** PP

           NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                   gkd++v++ +g+lvg+kktLvf++grapkg++t+Wvmheyrl
  OB02G44540.1 111 GKDRDVHH-RGKLVGMKKTLVFHSGRAPKGQRTNWVMHEYRL 151
                   ********.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-5511171IPR003441NAC domain
PROSITE profilePS5100555.9315171IPR003441NAC domain
PfamPF023653.0E-2717151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MTQSPPPDSA AAVPLAPGFR FHPTDEELVS YYLRRRIQGR RLRIDAIAEV DLYRLEPWDL  60
PSLSRIRSRD AQWYFFARLD RKVTGAGAGG RGGPGNRTNR ATPRGYWKTT GKDRDVHHRG  120
KLVGMKKTLV FHSGRAPKGQ RTNWVMHEYR LIDADGGVPQ DLYVVCRIFQ KTGSGPQNGA  180
QYGAPYLEED WEEEDDAIEN APASGTSTEI AAAADIADEE SNEEDGNFSF KTNNEPLHTQ  240
ECPPEIAPLK AQDSKETNGG GNSCDVFSLD EILQEPENVC KNEEQNAIDD NFTIAELGYP  300
RQDDGYVGEN GPVNWIGPSN GDTANWPLRA YSTQNHVNGT LSADGFFDTG NDTISYSGQQ  360
QICPSDNQNL YLQDDGLGTS HQVDDNMPFY DASSNHKWVD GKDDYVNLND LLYPPVENQS  420
LFDIGDDLMA YFDATEDDFK FDIMGTEGSS SQLPDMSNDF VQRDDNNNKF TLDGIPDTIY  480
GASSSGSHGK YTDTAVPDMP MDDTVDKGFG KRLASMLGSI PAPPAMASEL PPSTGKSVGP  540
LSAVNPNSSI RVTAGIIQLG SLTFTGSTER LQKNGDFNLV LSFTVEGDVS TKSIDFEPDR  600
QMSTTPMVFR SGMYLFFVSA MILMLSYKVG LCIYSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-4481718168Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G44540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1021730.0AK102173.1 Oryza sativa Japonica Group cDNA clone:J033086I18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006648145.10.0PREDICTED: NAC domain-containing protein 53
TrEMBLJ3LII70.0J3LII7_ORYBR; Uncharacterized protein
STRINGOB02G44540.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129312833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-64NAC domain containing protein 2