PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G42630.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 351aa    MW: 35809.8 Da    PI: 5.0039
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G42630.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.55.8e-091601991155
                   HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  OB02G42630.1 160 LRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 199
                   6******************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.929149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-8155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-13159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-13159209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-6160199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.62E-10161203No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MQPNGHEMHG GGGGSGQDDF FDQMLSTLPA VWSELGSGKP AWELAVGGGA SDDHSAAAFD  60
ESALLASRLR QHQIDGGGEK PIMLQLSDLH RHHGLAAGGE DGGAGGFLPL PLFADRSQDD  120
MDAAFKSPNG TGGNQALYNG FAAAGMHGAA AMQPPSFGQL RRERIAERMK ALQELVPNAN  180
KTDKASMLDE IIDYVKFLQL QVKVLSMSRL GGASAVTPLV ANMSSESNGN GNGASSSGNG  240
DAANGSSNGD NGGGTLRVTE QQVAKLMEED MGSAMQYLQG KGLCLMPISL ASAISSSAAA  300
SSSPLLPRPA GSVHEGGGNA TSPPPVGRTA AMAAAAVNSE SGWVVHEKSL C
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G42630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126101e-100CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688756.10.0PREDICTED: transcription factor bHLH66-like
TrEMBLJ3LHZ60.0J3LHZ6_ORYBR; Uncharacterized protein
STRINGOB02G42630.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.12e-44LJRHL1-like 1