PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G40170.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 283aa    MW: 31423.3 Da    PI: 9.305
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G40170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.4e-14129180155
                   CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +rr+h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++++k+L+
  OB02G40170.1 129 QRRNHIAVERNRRRQMNEYLAVLRSLMPPS---YAQRGDQASIVAGAINFVKELE 180
                   79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-16127191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.58E-12127177No hitNo description
Gene3DG3DSA:4.10.280.102.7E-14127184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.885128179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-11129180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-10134185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MALEAVVFPQ EHLSCAATYN AAPSLGCGVV DMDEFEENGG VVLQEEAAAA AMHGGAGGGT  60
SAWVNAATCA RSIASGAAVE EFWDERHFPV SPPALSRTXX XXXXXAKAAA RRRRRRPKVV  120
KNKEEAESQR RNHIAVERNR RRQMNEYLAV LRSLMPPSYA QRGDQASIVA GAINFVKELE  180
QLLQSLXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  240
XXXXXXXXDG GGAAVPRPHR APPQRHHHRR PFGPLFLQSQ DGG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110115RRRRRR
2130140RNHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G40170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0048144e-82AP004814.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0471A11.
GenBankAP0149584e-82AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126104e-82CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688739.11e-103PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH57-like
TrEMBLJ3LHA04e-94J3LHA0_ORYBR; Uncharacterized protein
STRINGOB02G40170.17e-95(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104622843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.12e-27bHLH family protein