PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB02G36730.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ZF-HD | ||||||||
Protein Properties | Length: 246aa MW: 25913.4 Da PI: 4.922 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 60.4 | 3.9e-19 | 171 | 212 | 3 | 46 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaAC 46 ++rY+eClkNhAa++G+h++DGCgEfm+s+g+ aaal CaA OB02G36730.1 171 SWRYRECLKNHAARMGAHVLDGCGEFMSSPGDG--AAALACAAV 212 579**************************8887..99*****96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 9.2E-16 | 172 | 211 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.3E-17 | 173 | 212 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 6.0E-10 | 173 | 200 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 19.651 | 174 | 222 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MEYKRSSHVE EEEEEEEEED EDEEDEEEAG HHQYTTAAAV VATGATQQLH PQVLGSSASS 60 PSSLMDAAAF SRPLLPPNLS LVSPSPPPPG GSFLHAAAHH HGQARRVERE RTVEMPGGES 120 QHQVQRHHEP ARNGVLGGGG APHAASTLAL VGGGGGGGPR AGEGAAPEAP SWRYRECLKN 180 HAARMGAHVL DGCGEFMSSP GDGAAALACA AVNDDMYLSA NTRLGLEPFS FAFDAFRLQK 240 TLVIRT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB02G36730.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF480496 | 1e-106 | AF480496.1 Oryza sativa clone BAC 49D11, complete sequence. | |||
GenBank | AP005323 | 1e-106 | AP005323.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0680A05. | |||
GenBank | AP005844 | 1e-106 | AP005844.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0060O16. | |||
GenBank | AP014958 | 1e-106 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015688708.1 | 1e-144 | PREDICTED: zinc-finger homeodomain protein 7-like | ||||
Swissprot | Q8S3Q9 | 7e-64 | ZHD7_ORYSJ; Zinc-finger homeodomain protein 7 | ||||
TrEMBL | J3LGA6 | 1e-177 | J3LGA6_ORYBR; Uncharacterized protein | ||||
STRING | OB02G36730.1 | 1e-177 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13491 | 23 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 1e-09 | zinc finger homeodomain 1 |