PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G29280.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 356aa    MW: 39784 Da    PI: 8.4642
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G29280.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.14.1e-54611861128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                   lppGfrFhPtdeel+++yL +k+++ ++ + +++ e+d++k+ePwdLp++++ +ekewyfF+ +d+ky+tg r+nrat+sgyWkatgkd+e+++ ++
  OB02G29280.1  61 LPPGFRFHPTDEELITHYLLRKAADPRFAA-RAVGEADLNKCEPWDLPSRATMGEKEWYFFCVKDRKYPTGLRTNRATESGYWKATGKDREIFR-GK 155
                   79*************************999.88***************988899****************************************.99 PP

           NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                   +lvg+kktLvfy+grap+g kt Wvmheyr+
  OB02G29280.1 156 ALVGMKKTLVFYTGRAPRGGKTGWVMHEYRI 186
                   *****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-6457208IPR003441NAC domain
PROSITE profilePS5100558.8161208IPR003441NAC domain
PfamPF023652.6E-2962186IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MVLKCLVMSS QVYYMRIARQ QRQVVDTTTM EHDVQHHHRH HGVQRQMMQQ RQQEEGEDMD  60
LPPGFRFHPT DEELITHYLL RKAADPRFAA RAVGEADLNK CEPWDLPSRA TMGEKEWYFF  120
CVKDRKYPTG LRTNRATESG YWKATGKDRE IFRGKALVGM KKTLVFYTGR APRGGKTGWV  180
MHEYRIHGKH ATAVVTSREW VLCRVFRKSL EPAAAGRRGA AAGTAVADVG PSSVSMPVED  240
VVGQFLNPPY LLPTADPTTA MAQGAIAGAD HLAMSSRSPF LESIQMQYAQ DAVAGGMVHE  300
LLMGGGGGGD WYCNKRERER LSGASQDTGL TSDVNPGEIS SSRQQHMDHD ASLWAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-55472111171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G29280.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0281800.0AB028180.1 Oryza sativa mRNA for OsNAC1 protein, complete cds.
GenBankCT8347640.0CT834764.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA110A07, full insert sequence.
GenBankCT8347650.0CT834765.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA021O03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688647.10.0PREDICTED: NAC domain-containing protein 92-like
SwissprotQ9FLJ29e-88NC100_ARATH; NAC domain-containing protein 100
TrEMBLJ3LE610.0J3LE61_ORYBR; Uncharacterized protein
STRINGOB02G29280.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27303787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.14e-83NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]